View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19097_low_62 (Length: 258)

Name: NF19097_low_62
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19097_low_62
NF19097_low_62
[»] chr4 (10 HSPs)
chr4 (11-258)||(3691166-3691412)
chr4 (130-170)||(22492922-22492962)
chr4 (131-167)||(4400731-4400767)
chr4 (130-167)||(5409491-5409528)
chr4 (11-110)||(24635505-24635605)
chr4 (137-167)||(49069467-49069497)
chr4 (130-167)||(24016624-24016660)
chr4 (130-158)||(11891926-11891954)
chr4 (130-158)||(11892672-11892700)
chr4 (130-166)||(27982158-27982194)
[»] chr3 (10 HSPs)
chr3 (29-113)||(29715928-29716009)
chr3 (11-75)||(21382066-21382130)
chr3 (131-167)||(29715906-29715942)
chr3 (131-169)||(21382149-21382187)
chr3 (130-165)||(1553757-1553792)
chr3 (128-166)||(3116648-3116686)
chr3 (136-166)||(7754335-7754365)
chr3 (130-167)||(15769173-15769210)
chr3 (136-165)||(30226717-30226746)
chr3 (130-166)||(5271734-5271770)
[»] chr5 (4 HSPs)
chr5 (20-73)||(19321719-19321772)
chr5 (131-167)||(21317404-21317440)
chr5 (131-167)||(41472438-41472474)
chr5 (130-165)||(12190645-12190680)
[»] scaffold0007 (1 HSPs)
scaffold0007 (130-167)||(180945-180982)
[»] chr8 (6 HSPs)
chr8 (130-167)||(30804568-30804605)
chr8 (29-73)||(13415400-13415444)
chr8 (130-165)||(12358144-12358179)
chr8 (130-165)||(12359272-12359307)
chr8 (130-167)||(17702760-17702797)
chr8 (130-166)||(23265896-23265932)
[»] chr7 (6 HSPs)
chr7 (130-167)||(18113760-18113797)
chr7 (29-81)||(27388320-27388372)
chr7 (137-167)||(7416874-7416904)
chr7 (137-167)||(49014905-49014935)
chr7 (130-167)||(3393250-3393287)
chr7 (130-166)||(23311983-23312019)
[»] chr2 (4 HSPs)
chr2 (130-167)||(25933819-25933856)
chr2 (130-167)||(43214830-43214867)
chr2 (130-166)||(33737771-33737807)
chr2 (130-167)||(13289729-13289766)
[»] chr1 (3 HSPs)
chr1 (130-167)||(8829505-8829542)
chr1 (130-167)||(2222796-2222833)
chr1 (130-167)||(40776257-40776294)
[»] chr6 (1 HSPs)
chr6 (29-113)||(2423038-2423123)
[»] scaffold0240 (1 HSPs)
scaffold0240 (130-166)||(10864-10900)
[»] scaffold0006 (1 HSPs)
scaffold0006 (130-170)||(36600-36640)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 3691166 - 3691412
Alignment:
Q  11 aatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataattataataacattgttgataatgaaagtgacaatt 110  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3691166 aatatcagcgttcttaactcaacaaaaagagacaaaacagataatgaacaacaacatatatataattataataacattgttgataatgaaagtgacaatt 3691265  T
Q  111 agttcc-ttnnnnnnnntatgaaagtgacaattagtcaattacatatatgatatatcccaatnnnnnnncactatagtagttcattacacatatctaaaa 209  Q
    |||||| ||        ||||||||||||||||||||||||||||||||||||||| ||||        |||  ||||||||||||||||||||| ||||    
T  3691266 agttcctttaaaaaaaatatgaaagtgacaattagtcaattacatatatgatatattccaaaaagaaaacac--tagtagttcattacacatatccaaaa 3691363  T
Q  210 aataatagaaacatcgtatccggcacatatcggttttccacggtctatc 258  Q
    |||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  3691364 aataatagaaacattgtatccgacacatatcggttttccacagtctatc 3691412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 22492922 - 22492962
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcccaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22492922 gaaagtgacaattagtcaattacatatatgatatatcccaa 22492962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 4400767 - 4400731
Alignment:
Q  131 aaagtgacaattagtcaattacatatatgatatatcc 167  Q
    |||||||||||||||||||||||||||||||||||||    
T  4400767 aaagtgacaattagtcaattacatatatgatatatcc 4400731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 5409528 - 5409491
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5409528 gaaagcgacaattagtcaattacatatatgatatatcc 5409491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 24635505 - 24635605
Alignment:
Q  11 aatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataattataa-taacattgttgataatgaaagtgacaat 109  Q
    ||||||||| |||| || ||||||||||||||||| ||||| | |  ||||||||| |||||||| || || ||| |||| | |||| ||||||||||||    
T  24635505 aatatcagctttctcaaaacaacaaaaagagacaatacagacattcgacaacaacaaaaatataaatacaagtaatattgattataacgaaagtgacaat 24635604  T
Q  110 t 110  Q
    |    
T  24635605 t 24635605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 49069497 - 49069467
Alignment:
Q  137 acaattagtcaattacatatatgatatatcc 167  Q
    |||||||||||||||||||||||||||||||    
T  49069497 acaattagtcaattacatatatgatatatcc 49069467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 24016624 - 24016660
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24016624 gaaagtgacaattagtcaattac-tatatgatatatcc 24016660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 11891954 - 11891926
Alignment:
Q  130 gaaagtgacaattagtcaattacatatat 158  Q
    |||||||||||||||||||||||||||||    
T  11891954 gaaagtgacaattagtcaattacatatat 11891926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 11892700 - 11892672
Alignment:
Q  130 gaaagtgacaattagtcaattacatatat 158  Q
    |||||||||||||||||||||||||||||    
T  11892700 gaaagtgacaattagtcaattacatatat 11892672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 27982194 - 27982158
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatc 166  Q
    ||||| || ||||||||||||||||||||||||||||    
T  27982194 gaaagcgataattagtcaattacatatatgatatatc 27982158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 29716009 - 29715928
Alignment:
Q  29 acaacaaaaagagacaaaa-cagataatgaacaacaacataaatataattataataacattgttgataatgaaagtgacaattagt 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    | |||||||| | ||||| |||||||||||||||    
T  29716009 acaacaaaaagagacaaaaacagataatgaacaacaacataaatataa----agtaacattgataataataaaagtgacaattagt 29715928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 21382066 - 21382130
Alignment:
Q  11 aatatcagcgttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatataa 75  Q
    |||||||||||||| ||  ||||||||||| |||||| ||||||||||||| ||||||| |||||    
T  21382066 aatatcagcgttctcaaaccaacaaaaagatacaaaatagataatgaacaaaaacataagtataa 21382130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 29715942 - 29715906
Alignment:
Q  131 aaagtgacaattagtcaattacatatatgatatatcc 167  Q
    |||||||||||||||||||||||||||||||||||||    
T  29715942 aaagtgacaattagtcaattacatatatgatatatcc 29715906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 21382149 - 21382187
Alignment:
Q  131 aaagtgacaattagtcaattacatatatgatatatccca 169  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21382149 aaagtgacaattagtcgattacatatatgatatatccca 21382187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 1553757 - 1553792
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatat 165  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1553757 gaaagtgacaactagtcaattacatatatgatatat 1553792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 3116686 - 3116648
Alignment:
Q  128 atgaaagtgacaattagtcaattacatatatgatatatc 166  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  3116686 atgaaagtgacaattagtcgaatacatatatgatatatc 3116648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 7754365 - 7754335
Alignment:
Q  136 gacaattagtcaattacatatatgatatatc 166  Q
    |||||||||||||||||||||||||||||||    
T  7754365 gacaattagtcaattacatatatgatatatc 7754335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 15769210 - 15769173
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  15769210 gaaagcgacaattagtcaattacatatatcatatatcc 15769173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 30226746 - 30226717
Alignment:
Q  136 gacaattagtcaattacatatatgatatat 165  Q
    ||||||||||||||||||||||||||||||    
T  30226746 gacaattagtcaattacatatatgatatat 30226717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 5271770 - 5271734
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatc 166  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  5271770 gaaagcgacaattagccaattacatatatgatatatc 5271734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 19321772 - 19321719
Alignment:
Q  20 gttcttaagacaacaaaaagagacaaaacagataatgaacaacaacataaatat 73  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  19321772 gttctcaaaacaacaaaaagagacaaaacaaataatgaacaacaacataaatat 19321719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 21317440 - 21317404
Alignment:
Q  131 aaagtgacaattagtcaattacatatatgatatatcc 167  Q
    |||||||||||||||||||||||||||| ||||||||    
T  21317440 aaagtgacaattagtcaattacatatattatatatcc 21317404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 41472438 - 41472474
Alignment:
Q  131 aaagtgacaattagtcaattacatatatgatatatcc 167  Q
    |||| ||||||||||||||||||||||||||||||||    
T  41472438 aaagcgacaattagtcaattacatatatgatatatcc 41472474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 12190680 - 12190645
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatat 165  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12190680 gaaagcgacaattagtcaattacatatatgatatat 12190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 180945 - 180982
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  180945 gaaagcgacaattagtcaattacatatatgatatatcc 180982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 30804568 - 30804605
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30804568 gaaagcgacaattagtcaattacatatatgatatatcc 30804605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 13415444 - 13415400
Alignment:
Q  29 acaacaaaaagagacaaaacagataatgaacaacaacataaatat 73  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||    
T  13415444 acaataaaaagagacaaaacatataattaacaacaacataaatat 13415400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 12358179 - 12358144
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatat 165  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12358179 gaaagcgacaattagtcaattacatatatgatatat 12358144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 12359307 - 12359272
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatat 165  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12359307 gaaagcgacaattagtcaattacatatatgatatat 12359272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 17702797 - 17702760
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  17702797 gaaaatgacatttagtcaattacatatatgatatatcc 17702760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 23265932 - 23265896
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatc 166  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  23265932 gaaagcgacaattagtcaactacatatatgatatatc 23265896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 18113760 - 18113797
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  18113760 gaaagcgacaattagtcaattacatatatgatatatcc 18113797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 27388372 - 27388320
Alignment:
Q  29 acaacaaaaagagacaaaacagataatgaacaacaacataaatataattataa 81  Q
    |||||||||||||| |||||| |||||||||||||||||| ||| || |||||    
T  27388372 acaacaaaaagagataaaacaaataatgaacaacaacatagatacaaatataa 27388320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 7416904 - 7416874
Alignment:
Q  137 acaattagtcaattacatatatgatatatcc 167  Q
    |||||||||||||||||||||||||||||||    
T  7416904 acaattagtcaattacatatatgatatatcc 7416874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 49014905 - 49014935
Alignment:
Q  137 acaattagtcaattacatatatgatatatcc 167  Q
    |||||||||||||||||||||||||||||||    
T  49014905 acaattagtcaattacatatatgatatatcc 49014935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 3393287 - 3393250
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  3393287 gaaagcgacaattagtcaattacatatataatatatcc 3393250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 23312019 - 23311983
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatc 166  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  23312019 gaaagcgacaattagtcaactacatatatgatatatc 23311983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 25933856 - 25933819
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25933856 gaaagcgacaattagtcaattacatatatgatatatcc 25933819  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 43214867 - 43214830
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  43214867 gaaagcgacaattagtcaattacatatatgatatatcc 43214830  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 33737771 - 33737807
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatc 166  Q
    |||||| ||||||||||||||||||||||||||||||    
T  33737771 gaaagtaacaattagtcaattacatatatgatatatc 33737807  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 13289766 - 13289729
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  13289766 gaaagcgacaattagtaaattacatatatgatatatcc 13289729  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 8829505 - 8829542
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  8829505 gaaagcgacaattagtcaattacatatatgatatatcc 8829542  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 2222796 - 2222833
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  2222796 gaaagcgacaattaatcaattacatatatgatatatcc 2222833  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 40776294 - 40776257
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcc 167  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40776294 gaaagcgaaaattagtcaattacatatatgatatatcc 40776257  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 2423123 - 2423038
Alignment:
Q  29 acaacaaaaagagacaaaacagataatgaacaacaacataaatataattat-aataacattgttgataatgaaagtgacaattagt 113  Q
    |||| |||||||||||||| | | | || ||||||||||||||| || ||| ||||| |||| | |||| ||||||||||||||||    
T  2423123 acaataaaaagagacaaaagatacactggacaacaacataaataaaaatataaataatattgataataaagaaagtgacaattagt 2423038  T

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Target: scaffold0240 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 10900 - 10864
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatc 166  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  10900 gaaagcgacgattagtcaattacatatatgatatatc 10864  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 36640 - 36600
Alignment:
Q  130 gaaagtgacaattagtcaattacatatatgatatatcccaa 170  Q
    |||||| | |||||||||||||||||||||||||| |||||    
T  36640 gaaagtaaaaattagtcaattacatatatgatataccccaa 36600  T

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