View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_66 (Length: 254)
Name: NF19097_low_66
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_66 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 44395854 - 44396101
Alignment:
| Q |
7 |
gaggagcagagagaggaaattgtatacaaacagtcctggttacaaatggcctagctataagcaaactatgtggagtcacattgtttttgaacatcctgca |
106 |
Q |
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| T |
44395854 |
gaggaacagacagaggaaattgtatacaaacagtcctggttacaaatggcctagctataagcaaactatgtggagtcacattgtttttgaacatcctgca |
44395953 |
T |
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| Q |
107 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggta |
206 |
Q |
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| T |
44395954 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggta |
44396053 |
T |
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| Q |
207 |
aagcttggaaaaggggttatttactttttggtcctccaggtactggta |
254 |
Q |
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| T |
44396054 |
aagcttggaaaaggggttatttactttttggtcctccaggtactggta |
44396101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 53395396 - 53395452
Alignment:
| Q |
107 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttg |
163 |
Q |
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| T |
53395396 |
acttttgatacattggctatggatcctatgaagaagaaagagattatggaagatttg |
53395452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 1800681 - 1800718
Alignment:
| Q |
77 |
tggagtcacattgtttttgaacatcctgcaacttttga |
114 |
Q |
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| T |
1800681 |
tggagtcacattgtttttgaacatcctgcgacttttga |
1800718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 6971021 - 6971186
Alignment:
| Q |
87 |
ttgtttttgaacatcctgcaacttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaagga |
186 |
Q |
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| T |
6971021 |
ttgtgtttgaacatccttcaacatttgaaacattagctatggatttcgagaagaagaaaatgatcattgatgatcttattacatttagtaaagctggtga |
6971120 |
T |
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| Q |
187 |
tttttatgctaggattggtaaagcttggaaaaggggttatttactttttggtcctccaggtactgg |
252 |
Q |
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| T |
6971121 |
attctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactgg |
6971186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 2842237 - 2842282
Alignment:
| Q |
201 |
ttggtaaagcttggaaaaggggttatttactttttggtcctccagg |
246 |
Q |
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| T |
2842237 |
ttggaaaagcttggaaacgtggttatctactttttggtcctccagg |
2842282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 11449895 - 11449935
Alignment:
| Q |
212 |
tggaaaaggggttatttactttttggtcctccaggtactgg |
252 |
Q |
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| T |
11449895 |
tggaaaagaggttatttactttatggtcctccagggactgg |
11449935 |
T |
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