View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_67 (Length: 254)
Name: NF19097_low_67
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4970277 - 4970039
Alignment:
| Q |
1 |
aaatgttgagaggaagacttagaagtatatccttttataaagccttcaatgcagtcaaacttcaaatgtaaaatatgttatgtcttaaatgnnnnnnnnn |
100 |
Q |
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| T |
4970277 |
aaatgttgagaggaagacttagaagtatatccttttataaagccttcaatgcagtcaaacttcaaatgtaaaatatgttatgtcttaaatgttttttttt |
4970178 |
T |
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| Q |
101 |
nnnnnnnnnnnnngaccaagtctcaaacgttgtttattttatttatcgtcacgatttcttaaatagatggcatttccatataggaaataggatatcctct |
200 |
Q |
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| T |
4970177 |
ctttctttt----gaacaagtctcaaacgttgtttattttatttatcgtcacgatttcttaaatagatggcatttccatataggaaataggatatcctct |
4970082 |
T |
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| Q |
201 |
caacaaagtagaaaatatgatataggtggatattgtagatatt |
243 |
Q |
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| T |
4970081 |
caacaaagtagaaaatatgatataggtggatattgtagatatt |
4970039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 4970322 - 4970276
Alignment:
| Q |
3 |
atgttgagaggaagacttagaagtatatccttttataaagccttcaa |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970322 |
atgttgagaggaagacttagaagtatatccttttataaagccttcaa |
4970276 |
T |
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