View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19097_low_7 (Length: 517)

Name: NF19097_low_7
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19097_low_7
NF19097_low_7
[»] chr5 (3 HSPs)
chr5 (359-510)||(25559079-25559229)
chr5 (105-467)||(26059799-26060160)
chr5 (362-398)||(23341357-23341393)
[»] chr8 (5 HSPs)
chr8 (160-467)||(15063839-15064148)
chr8 (257-495)||(16217890-16218128)
chr8 (314-460)||(22707429-22707575)
chr8 (105-240)||(24272081-24272216)
chr8 (368-499)||(24371102-24371232)
[»] scaffold0113 (1 HSPs)
scaffold0113 (115-409)||(22293-22586)
[»] chr4 (2 HSPs)
chr4 (115-409)||(12461407-12461700)
chr4 (266-410)||(22090455-22090601)
[»] chr7 (2 HSPs)
chr7 (169-412)||(16366876-16367118)
chr7 (31-101)||(8910102-8910170)
[»] chr6 (2 HSPs)
chr6 (117-196)||(22785114-22785193)
chr6 (420-505)||(22784538-22784623)
[»] chr3 (3 HSPs)
chr3 (257-412)||(14264265-14264421)
chr3 (169-248)||(2281565-2281644)
chr3 (257-302)||(16015747-16015793)
[»] chr2 (1 HSPs)
chr2 (113-196)||(39665882-39665965)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 359 - 510
Target Start/End: Complemental strand, 25559229 - 25559079
Alignment:
Q  359 attatgacacataagtgaaaaacaagattatagcttattaggtagaacaaaccttagccctcttacctggtttcctctaaagcttagctaatacaccaaa 458  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||||| | ||| ||||||| |||||||| |||||||||||||| |||||||    
T  25559229 attatgacccataagtgaaaaacaagattatagcttattagataaaacaaacct-atcccccttaccttgtttcctcgaaagcttagctaatccaccaaa 25559131  T
Q  459 atcgtcacttctcttgtgattcctagctctcctcttcacttgggttcatctc 510  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  25559130 atcttcactcctcttgtgattcctagctctcctcttcacttgggttcttctc 25559079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 467
Target Start/End: Original strand, 26059799 - 26060160
Alignment:
Q  105 ttctcaagaccaacatatacccaacaatattcataacacataaattacgacttcatcataaataaacaacaacatcatccttttcaccaattcaagttaa 204  Q
    ||||||| || ||||| |||||||||| ||| ||| || |||||| | || |||| ||| ||| ||| ||||| ||||| | |||||| ||| ||| |||    
T  26059799 ttctcaaaacaaacatttacccaacaacatttatagcatataaatcatgatttcaacattaatcaactacaacttcatcatcttcaccgatttaagctaa 26059898  T
Q  205 atcttccaagtaaaaaacttatcatacaacaacaatgaaatttatatgcaataacaacaagatttcaacaaatttcaca-acccaaaat-caccacttaa 302  Q
    ||  || || |||| |||||| ||||   ||||||||||||| ||  |||  |||| |||| ||||||||| ||||||| ||||||| | ||  ||||||    
T  26059899 attctcaaactaaacaacttaacatatgtcaacaatgaaattcat--gcatcaacaccaagttttcaacaactttcacatacccaaatttcaatacttaa 26059996  T
Q  303 atatgagtacgaaaattacacatataaccatcaattttcacaaatataccaaaatcattatgacacataagtgaaaaacaagattatagcttattaggta 402  Q
     | | |  | |||||||||||||||||  ||||||||||||||||  | |||||  | |||| | ||||||  ||||||| |||||||| |||||| | |    
T  26059997 ttctaaacatgaaaattacacatataattatcaattttcacaaattaatcaaaacaaatatggcccataagctaaaaacatgattatagattattaagaa 26060096  T
Q  403 gaacaaacct-tagccctcttacctggtttcctctaaagcttagctaatacaccaaaatcgtcact 467  Q
    |||||||  | |||  ||||||||| | ||||| ||||||||||||||| |||||||||| |||||    
T  26060097 gaacaaatatatag--ctcttaccttgattcctttaaagcttagctaattcaccaaaatcttcact 26060160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 23341393 - 23341357
Alignment:
Q  362 atgacacataagtgaaaaacaagattatagcttatta 398  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  23341393 atgacccataagtgaaaaactagattatagcttatta 23341357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 160 - 467
Target Start/End: Original strand, 15063839 - 15064148
Alignment:
Q  160 tcataaataaacaacaacatcatcc---ttttcaccaattcaagttaaatcttccaagtaaaaaacttatcatacaacaacaatgaaatttatatgcaat 256  Q
    |||||||| |||||||| ||||||    |||||||||||| ||| |||||  || ||||||| |||||| |||| | ||||||||||||||||  |||      
T  15063839 tcataaatcaacaacaatatcatcaccattttcaccaatttaagctaaattctcaaagtaaacaacttaacatatatcaacaatgaaatttat--gcatc 15063936  T
Q  257 aacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaatttt-cacaaatataccaa 354  Q
    ||||||||| ||||||||| ||||||| ||||||| ||||||||||| |   || || |||||||||||||||| |||||||||| ||||| |  | |||    
T  15063937 aacaacaagttttcaacaactttcacatacccaaactcaccacttaattccaagcacaaaaattacacatataatcatcaatttttcacaattcaatcaa 15064036  T
Q  355 aatcattatgacacataagtgaaaaacaagattatagcttattaggtagaacaaaccttagccctcttacctggtttcctctaaagctt-agctaataca 453  Q
    ||  | |||||| ||||||| ||||| | |||||||| ||||||||||||||||| |||| ||| |||| ||||||| |||| |||||| ||||||| ||    
T  15064037 aacaaatatgacccataagtcaaaaatatgattatagattattaggtagaacaaa-cttatcccccttagctggttt-ctcttaagcttaagctaattca 15064134  T
Q  454 ccaaaatcgtcact 467  Q
    |||||||| |||||    
T  15064135 ccaaaatcttcact 15064148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 257 - 495
Target Start/End: Original strand, 16217890 - 16218128
Alignment:
Q  257 aacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacat--ataaccatcaattttcacaaatatacca 353  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||| || |||||||||| ||||  | || ||||||||| || || |    ||    
T  16217890 aacaacaagttttcaacaaatttcacatacccaaaatcaccacttaattataagcacgaaaatta-acatccaaaatcatcaattt-cataattcattca 16217987  T
Q  354 aaatcattatgacacataagtgaaaaacaagattatagcttattaggtagaacaaaccttagccctcttacctggtttcctctaaagcttagctaataca 453  Q
    |||  | |||||| |||||  |||||||||||||||||||||||| |||||||||||| || ||| ||||||| |||||||||||| |||||| | | ||    
T  16217988 aaacaaatatgacccataaaagaaaaacaagattatagcttattaagtagaacaaacc-tatcccccttaccttgtttcctctaaatcttagccactcca 16218086  T
Q  454 ccaaaatcgtcacttctcttgtgattcctagctctcctcttc 495  Q
     ||||||  ||||| |||||||||||||||||||||| ||||    
T  16218087 acaaaattttcactcctcttgtgattcctagctctccccttc 16218128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 314 - 460
Target Start/End: Complemental strand, 22707575 - 22707429
Alignment:
Q  314 aaaattacacatataaccatcaattttcacaaatataccaaaatcattatgacacataagtgaaaaacaagattatagcttattaggtagaacaaacctt 413  Q
    |||||||||||||||  |||||||||||||||||| | |||||  | |||| | ||||||  ||||||| |||||||| |||||||| |||||||||| |    
T  22707575 aaaattacacatatactcatcaattttcacaaataaatcaaaacaaatatgtcccataagctaaaaacatgattatagattattaggaagaacaaacc-t 22707477  T
Q  414 agccctcttacctggtttcctctaaagctt-agctaatacaccaaaat 460  Q
    | ||   |||||| | ||||||| |||||| ||||||| |||||||||    
T  22707476 atcctcattaccttgattcctcttaagcttaagctaattcaccaaaat 22707429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 24272081 - 24272216
Alignment:
Q  105 ttctcaagaccaacatatacccaacaatattcataacacataaattacgacttcatcataaataaacaacaacatcatccttttcaccaattcaagttaa 204  Q
    ||||||| || |||||||||||||||| | ||||| || |||||| | || |||||||| ||| | |||||| |||||| |||||||||||| ||| |||    
T  24272081 ttctcaacacaaacatatacccaacaacactcatatcatataaatcatgaattcatcattaatcatcaacaaaatcatcattttcaccaatttaagctaa 24272180  T
Q  205 atcttccaagtaaaaaacttatcatacaacaacaat 240  Q
    |   || |||| ||  ||||| ||||||||||||||    
T  24272181 aatctcaaagtgaaccacttaacatacaacaacaat 24272216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 499
Target Start/End: Original strand, 24371102 - 24371232
Alignment:
Q  368 cataagtgaaaaacaagattatagcttattaggtagaacaaaccttagccctcttacctggtttcctctaaagcttagctaatacaccaaaatcgtcact 467  Q
    |||||||||||||  |||||||||||||||| ||||||   |||| | ||| ||||| | |||||||| |||||| |||||||   | | |||| ||| |    
T  24371102 cataagtgaaaaagtagattatagcttattaagtagaatctacct-atcccccttacattgtttcctccaaagctaagctaatcttcaagaatcttcatt 24371200  T
Q  468 tctcttgtgattcctagctctcctcttcactt 499  Q
     ||||||||||||| |||||||||||||||||    
T  24371201 cctcttgtgattccaagctctcctcttcactt 24371232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 115 - 409
Target Start/End: Complemental strand, 22586 - 22293
Alignment:
Q  115 caacatatacccaacaatattcataacacataaattacgacttcatcataaataaacaacaacatcatccttttcaccaattcaagttaaatcttccaag 214  Q
    ||||||||||||||||| ||| ||| ||||||||| | || |||||||| ||| ||||||||||||||| | ||||| |||| ||| ||||   || |||    
T  22586 caacatatacccaacaacatttatatcacataaatcatgaattcatcattaatcaacaacaacatcatcatattcactaatttaagctaaactctcaaag 22487  T
Q  215 taaaaaacttatcatacaacaacaatgaaatttatatgcaataacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacg 313  Q
    |||| |||||| |||| | ||| |||||||||  ||||||  ||||||||| ||||||||| ||||||| || |||| ||||||||||| |   |  |||    
T  22486 taaacaacttaacatatatcaataatgaaatt--tatgcatcaacaacaagttttcaacaactttcacatactcaaactcaccacttaattcaaatcacg 22389  T
Q  314 aaaattacacatataaccatcaattttcacaaatataccaaaatcattatgacacataagtgaaaaacaagattatagcttattaggtagaacaaa 409  Q
    ||| || ||||||||| ||| ||| |||||||||  | |||||  | |||||| ||||||  ||||||| |||||||| |||||||| ||||||||    
T  22388 aaagttgcacatataatcattaatcttcacaaatcaaacaaaacaaatatgactcataagctaaaaacatgattatagattattaggaagaacaaa 22293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 115 - 409
Target Start/End: Original strand, 12461407 - 12461700
Alignment:
Q  115 caacatatacccaacaatattcataacacataaattacgacttcatcataaataaacaacaacatcatccttttcaccaattcaagttaaatcttccaag 214  Q
    |||||||||||||| || ||| ||| ||||||||| | || ||||  || ||| |||||||||| |||| ||||||| |||| ||| |||||  || |||    
T  12461407 caacatatacccaaaaacatttatagcacataaatcatgaattcaatattaatcaacaacaacaacatcattttcactaatttaagctaaattctcaaag 12461506  T
Q  215 taaaaaacttatcatacaacaacaatgaaatttatatgcaataacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacg 313  Q
    | || |||||| |||| | |||||||||||||  ||||||  |||||| || ||||||||| ||||| | ||||||| ||||||||||| |   || |||    
T  12461507 tgaacaacttaacatatatcaacaatgaaatt--tatgcatcaacaacgagttttcaacaactttcatatacccaaattcaccacttaatttcaagcacg 12461604  T
Q  314 aaaattacacatataaccatcaattttcacaaatataccaaaatcattatgacacataagtgaaaaacaagattatagcttattaggtagaacaaa 409  Q
    |||||||||||||||| |||||||||||||||||    |||||  | |||||| ||||||  ||||||| |||||||| ||||||||  |||||||    
T  12461605 aaaattacacatataatcatcaattttcacaaatcattcaaaacaaatatgacccataagctaaaaacatgattatagattattaggaggaacaaa 12461700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 22090455 - 22090601
Alignment:
Q  266 atttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaattttcacaaatataccaaaat-cattat 363  Q
    |||||||||| ||||||| ||||||| |||| |||||| |   || ||||||||||||||||||| ||||||||||||||| |  | ||||||  |||||    
T  22090455 atttcaacaactttcacatacccaaattcactacttaattccaagcacgaaaattacacatataatcatcaattttcacaattcaaacaaaataaattat 22090554  T
Q  364 gacacataagtgaaaaacaagattatagcttattaggtagaacaaac 410  Q
    ||| ||||||  ||||||| |||||||| |||||||| |||||||||    
T  22090555 gacccataagctaaaaacatgattatagattattaggaagaacaaac 22090601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 169 - 412
Target Start/End: Original strand, 16366876 - 16367118
Alignment:
Q  169 aacaacaacatcatccttttcaccaattcaagttaaatcttccaagtaaaaaacttatcatacaacaacaatgaaatttatatgcaataacaacaagatt 268  Q
    ||||||||||||||| | |||||||||| ||| ||| |  || ||||||| |||||| |||| | |||||||||||||  ||||||  ||||| ||| ||    
T  16366876 aacaacaacatcatcatcttcaccaatttaagctaatttctcaaagtaaacaacttaacatatatcaacaatgaaatt--tatgcatcaacaataagttt 16366973  T
Q  269 tcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaattttcacaaatataccaaaatcattatgaca 367  Q
    ||||||| ||||  | ||||||| |||||||| || |   || |||||| |||||||||||| ||||||||||||||| |  | |||||  | ||||||     
T  16366974 tcaacaactttcgtatacccaaattcaccactcaattccaagaacgaaagttacacatataatcatcaattttcacaattcaatcaaaaaaagtatgacc 16367073  T
Q  368 cataagtgaaaaacaagattatagcttattaggtagaacaaacct 412  Q
    ||||||| ||||||| |||||||  |||||||| |||||||||||    
T  16367074 cataagttaaaaacatgattatatattattaggaagaacaaacct 16367118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 8910170 - 8910102
Alignment:
Q  31 agtcatttccattaagtttagagagggattcctcaatggtcaagctgtaccacattttatttaattcagag 101  Q
    |||||||| |||||||||| |||  |||| |||| || ||||||| |||||||||||||||||||||||||    
T  8910170 agtcatttacattaagtttggag--ggatgcctctatagtcaagcagtaccacattttatttaattcagag 8910102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 22785193 - 22785114
Alignment:
Q  117 acatatacccaacaatattcataacacataaattacgacttcatcataaataaacaacaacatcatccttttcaccaatt 196  Q
    ||||||||||||||| ||||||| ||||||| | | || |||||||| ||| ||||||||||||||| ||||||||||||    
T  22785193 acatatacccaacaacattcatagcacataattcatgaattcatcattaatcaacaacaacatcatcattttcaccaatt 22785114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 22784623 - 22784538
Alignment:
Q  420 cttacctggtttcctctaaagcttagctaatacaccaaaatcgtcacttctcttgtgattcctagctctcctcttcacttgggttc 505  Q
    ||||||| ||||||| ||| | ||||||||| |||||||||| | | | |||| |||| ||||||||||| |||||||||||||||    
T  22784623 cttaccttgtttcctataatgattagctaatccaccaaaatccttaatcctctagtgaatcctagctctcatcttcacttgggttc 22784538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 412
Target Start/End: Original strand, 14264265 - 14264421
Alignment:
Q  257 aacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaattttcacaaatataccaaa 355  Q
    ||||| ||| ||||||||| ||||||| || |||| ||||||||||| |   || |||||||||| |||||||| ||| ||||||||| |||  | ||||    
T  14264265 aacaaaaagttttcaacaattttcacatactcaaattcaccacttaatttcaagcacgaaaattagacatataatcataaattttcaccaatcaatcaaa 14264364  T
Q  356 atcattatgacacataagtgaaaaacaagattatagcttattaggtagaacaaacct 412  Q
    |  | |||||| |||| |  ||||| | |||||||| ||||||||||||||||||||    
T  14264365 acaaatatgacccatatgctaaaaatatgattatagattattaggtagaacaaacct 14264421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 2281565 - 2281644
Alignment:
Q  169 aacaacaacatcatccttttcaccaattcaagttaaatcttccaagtaaaaaacttatcatacaacaacaatgaaattta 248  Q
    ||||||| ||||||| ||| |||||||| ||| ||||| ||| |||| || |||||| |||| | |||||||||||||||    
T  2281565 aacaacaccatcatcatttacaccaatttaagctaaattttcaaagtgaacaacttagcatatatcaacaatgaaattta 2281644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 16015793 - 16015747
Alignment:
Q  257 aacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaa 302  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  16015793 aacaacaagttttcaacaattttcacatacccaaaatcaccacttaa 16015747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 39665965 - 39665882
Alignment:
Q  113 accaacatatacccaacaatattcataacacataaattacgacttcatcataaataaacaacaacatcatccttttcaccaatt 196  Q
    |||||||| |||||||||| ||||||| || | || | | || |||||||||||| ||||||||||| | | ||||||||||||    
T  39665965 accaacatgtacccaacaacattcatagcatacaattcatgaattcatcataaatcaacaacaacattaacattttcaccaatt 39665882  T

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