View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_72 (Length: 252)
Name: NF19097_low_72
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_72 |
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| [»] scaffold0062 (3 HSPs) |
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| [»] scaffold0443 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 47886 - 48114
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47886 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
47985 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
47986 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
48085 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttg |
234 |
Q |
| |
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|||||||||||| |||||||||||||||| |
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| T |
48086 |
ggccaacaaagacataattaactgggttg |
48114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 60425 - 60653
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
60425 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
60524 |
T |
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| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
60525 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
60624 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttg |
234 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
60625 |
ggccaacaaagacataattaactgggttg |
60653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 72544 - 72772
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
72544 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
72643 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
72644 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
72743 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttg |
234 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
72744 |
ggccaacaaagacataattaactgggttg |
72772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 18691235 - 18691463
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
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|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18691235 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
18691334 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
18691335 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
18691434 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttg |
234 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
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| T |
18691435 |
ggccaacaaagacataattaactgggttg |
18691463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 15698974 - 15699202
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
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|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15698974 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
15699073 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
15699074 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
15699173 |
T |
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| Q |
206 |
ggccaacaaagagataattaactgggttg |
234 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
15699174 |
ggccaacaaagacataattaactgggttg |
15699202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 15711513 - 15711741
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
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|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15711513 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
15711612 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
15711613 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
15711712 |
T |
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| Q |
206 |
ggccaacaaagagataattaactgggttg |
234 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
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| T |
15711713 |
ggccaacaaagacataattaactgggttg |
15711741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 15723991 - 15724219
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
15723991 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
15724090 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
15724091 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
15724190 |
T |
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| Q |
206 |
ggccaacaaagagataattaactgggttg |
234 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
15724191 |
ggccaacaaagacataattaactgggttg |
15724219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 8901 - 8933
Alignment:
| Q |
35 |
cataattgatggtattgatattaactatgagta |
67 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
8901 |
cataattgatggtattgatattaactatgagta |
8933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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