View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_78 (Length: 249)
Name: NF19097_low_78
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 35795315 - 35795096
Alignment:
| Q |
12 |
atgaaaaccaaagtagagtgcatggaatttttatcaaacaaattgtaagatgctatttagtataataactaaacaacagaaacacacatgaacgtggaaa |
111 |
Q |
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| T |
35795315 |
atgaaaaccaaagtagagtgcatggaatttttatcaaacaaattgtaagatgctatttagtataataactaaacaacagaaacacacatgaacgtggaaa |
35795216 |
T |
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| Q |
112 |
tatggtcttaagnnnnnnnngaagagagataaaaatggaagtgcattactttataacttatcataatcacttttgtttaaggtgacagctaatttgagag |
211 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35795215 |
tatggtcttaagaaaaaaaagaagagagataaaaatggaagtgcattactttataacttatcataatcacttttgtttaaggtgacagctaatttgagag |
35795116 |
T |
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| Q |
212 |
agtttacaacactgctgatt |
231 |
Q |
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|||||||||||||||||||| |
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| T |
35795115 |
agtttacaacactgctgatt |
35795096 |
T |
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