View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_79 (Length: 248)
Name: NF19097_low_79
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 44396176 - 44396390
Alignment:
| Q |
15 |
gataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44396176 |
gataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga |
44396275 |
T |
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| Q |
115 |
agaaaaaaggtgaaagtaagnnnnnnnctgatgatgagaacgaaaataaggctaattttgatgctgtgaggaaggaggtgaaggaagaaggaagtggcag |
214 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44396276 |
agaaaaaaggtgaaagtaagtttttttctgatgatgagaatgaaaataaggctaattttgatgctgtgaggaaggaggtgaaggaagaaggaagtggtag |
44396375 |
T |
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| Q |
215 |
tggtagtgggggtgg |
229 |
Q |
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||||||||||||||| |
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| T |
44396376 |
tggtagtgggggtgg |
44396390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 6971263 - 6971362
Alignment:
| Q |
15 |
gataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga |
114 |
Q |
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| T |
6971263 |
gataacactgagttgaggaagcttttgattgagacatcaagtaagtctataattgtgattgaagatattgattgttcacttgatttgactggtcaaagga |
6971362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 6968452 - 6968553
Alignment:
| Q |
16 |
ataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaa |
115 |
Q |
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| T |
6968452 |
ataatgctgagttaaggaaacttttgattggaatcacgagtaagtcagttgttgttatagaagatattgattgttcgcttgatcttaccggtcagaggaa |
6968551 |
T |
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| Q |
116 |
ga |
117 |
Q |
| |
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|| |
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| T |
6968552 |
ga |
6968553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 11450024 - 11450111
Alignment:
| Q |
27 |
ttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga |
114 |
Q |
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|||||||||||||||||||||| ||||||| || || ||||| |||||||| || ||||||||||||||| | || |||||||||| |
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| T |
11450024 |
ttgaggaagcttttgattgagatatcaagtaaatctataattgtgattgaagatatagattgttcacttgatttgactggtcaaagga |
11450111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 2842386 - 2842468
Alignment:
| Q |
36 |
cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa |
118 |
Q |
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|||||||||||||| | ||||| || ||||||||||||||||| ||||||||||| || ||||| || || ||||||||||| |
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| T |
2842386 |
cttttgattgagacgtcgagtaaatcgattattgttattgaagatattgattgttctctcgatctcaccgggcaaaggaagaa |
2842468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 2865922 - 2865840
Alignment:
| Q |
36 |
cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa |
118 |
Q |
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|||||||||||||| | || || ||| |||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||| |
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| T |
2865922 |
cttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattgttctcttgagcttaccggtcaaaggaagaa |
2865840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 2885112 - 2885030
Alignment:
| Q |
36 |
cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa |
118 |
Q |
| |
|
|||||||||||||| |||| || ||| |||| ||||||||||| ||||||||||| || || ||||| |||||||||||||| |
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| T |
2885112 |
cttttgattgagacgtcaagcaaatcagttatcgttattgaagatattgattgttctctcgagcttactggtcaaaggaagaa |
2885030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 2829028 - 2829115
Alignment:
| Q |
36 |
cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaaaaaag |
123 |
Q |
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|||||||| ||||| | ||||| || ||||| ||||||||||| ||||||||||| |||||||| || || ||||| ||||| |||| |
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| T |
2829028 |
cttttgatcgagacgtcgagtaaatcgattatagttattgaagatattgattgttctcttgatctcaccggccaaagaaagaagaaag |
2829115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 2833247 - 2833152
Alignment:
| Q |
23 |
tgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa |
118 |
Q |
| |
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|||||||| || ||||||||||| || ||||||| || ||||| ||||| ||||| ||||||||||| || ||||| || || ||||||||||| |
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| T |
2833247 |
tgagttgaagagacttttgattgaaacgtcaagtaaatcgattatagttatcgaagatattgattgttctctcgatctcactgggcaaaggaagaa |
2833152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 2860543 - 2860461
Alignment:
| Q |
36 |
cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa |
118 |
Q |
| |
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|||||||||||||| | || || ||| |||| ||||||||||| ||||||||||| || || ||||| ||||| |||||||| |
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| T |
2860543 |
cttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattgttctctcgagcttaccggtcagaggaagaa |
2860461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 1800933 - 1801035
Alignment:
| Q |
15 |
gataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga |
114 |
Q |
| |
|
|||||||| ||||| || ||| | || ||||||||| | ||||| | ||||| ||| ||||||| |||||||||||||||||| |||| | ||||||| |
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| T |
1800933 |
gataataccgagttaagaaagttgttaattgagacttctagtaaagctattatagttgttgaagatattgattgttcacttgattttactagccaaagga |
1801032 |
T |
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| Q |
115 |
aga |
117 |
Q |
| |
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||| |
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|
| T |
1801033 |
aga |
1801035 |
T |
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