View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_8 (Length: 516)
Name: NF19097_low_8
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 233 - 506
Target Start/End: Complemental strand, 5175000 - 5174727
Alignment:
| Q |
233 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5175000 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
5174901 |
T |
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| Q |
333 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174900 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
5174801 |
T |
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| Q |
433 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtctgtg |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5174800 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtttgtg |
5174727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 233 - 499
Target Start/End: Complemental strand, 52002800 - 52002537
Alignment:
| Q |
233 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
332 |
Q |
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||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||| | |||||||||| |
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| T |
52002800 |
cgttaaacaaaaaagtaacataataagattaatcaaggtattttatttgccaataatatttgtaccatcat---aaaagatagattctacggtttgtttc |
52002704 |
T |
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| Q |
333 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
432 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002703 |
cactaaatctttacttgatatttgatcaaattaaatccaaatactgaacacctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
52002604 |
T |
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| Q |
433 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttc |
499 |
Q |
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||||||||| |||||||||| ||||||||||| ||| ||||||||||| |||| || ||||||||| |
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| T |
52002603 |
gcaattgaactttgtttttcgtccttaaccaagtattataagcatattgcatacgtctcttcttttc |
52002537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 5178420 - 5178208
Alignment:
| Q |
17 |
aatttattgtgtcagctgtgaagaatataaggtgatagttttaacttgaggttctaaactcttatactgacaannnnnnnnnnnnaaattgtacaagctc |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || |
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| T |
5178420 |
aatttattctgtcagctgtgaagaatataaggtgatagttttaacttgaggttctaa-ctcttatactgacaattttttctttttaaattgtacaaggtc |
5178322 |
T |
|
| Q |
117 |
tttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178321 |
tttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgat |
5178222 |
T |
|
| Q |
217 |
gggaaattttgatt |
230 |
Q |
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|||||||||||||| |
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| T |
5178221 |
gggaaattttgatt |
5178208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 52008615 - 52008403
Alignment:
| Q |
17 |
aatttattgtgtcagctgtgaagaatataaggtgatagttttaacttgaggttctaaactcttatactgacaannnnnnnnnnnnaaattgtacaagctc |
116 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||| ||| || || |||||| || |
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| T |
52008615 |
aatttattgtgtcagctgtgaggaatataaggtgatagttttaacttgaggttctaa-ctcatagactggcaattttttctttttaatttatacaagatc |
52008517 |
T |
|
| Q |
117 |
tttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgat |
216 |
Q |
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|||||||||||| | ||| || |||| ||||||||||||| | ||||||||||| ||||||||| ||||||||||||| ||||||| ||| ||||||| |
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| T |
52008516 |
tttacttagaagagaatgattttttgcctctagaacttcaaatagttctatttaccttcctttaattggaagatagataaatgcctctgaatttgatgat |
52008417 |
T |
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| Q |
217 |
gggaaattttgatt |
230 |
Q |
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|||||||||||||| |
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| T |
52008416 |
gggaaattttgatt |
52008403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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