View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_88 (Length: 237)
Name: NF19097_low_88
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 14238235 - 14238337
Alignment:
| Q |
4 |
accgatataattttgttctccaagttgcaaagaatccatatcgcccaagcttgtatcatgtttaaacttagaccataggtaacagctagaccagcaatgc |
103 |
Q |
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| T |
14238235 |
accgatataattttgttctccaagttgcaaagaatccatatcgcccaagcttgtatcatgtttaaacttagaccataggtaacagctagaccagcaatgc |
14238334 |
T |
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| Q |
104 |
ctt |
106 |
Q |
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||| |
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| T |
14238335 |
ctt |
14238337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 41449326 - 41449428
Alignment:
| Q |
4 |
accgatataattttgttctccaagttgcaaagaatccatatcgcccaagcttgtatcatgtttaaacttagaccataggtaacagctagaccagcaatgc |
103 |
Q |
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| T |
41449326 |
accgatataattttgttctccaagttgcaaagattccatatcacccaagcttgtatcatgtttaaatttagaccataggtaacagctagaccagcaaggc |
41449425 |
T |
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| Q |
104 |
ctt |
106 |
Q |
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||| |
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| T |
41449426 |
ctt |
41449428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 41436110 - 41436215
Alignment:
| Q |
1 |
tctaccgatataattttgttctccaagttgcaaagaatccatatcgcccaagcttgtatcatgtttaaacttagaccataggtaacagctagaccagcaa |
100 |
Q |
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| T |
41436110 |
tctaccgatataattttgttttccaagttgcaaagattccatatcacccaagcttgtgtcctgtttaaagttagaccataggtaacagctagaccagcaa |
41436209 |
T |
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| Q |
101 |
tgcctt |
106 |
Q |
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|||||| |
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| T |
41436210 |
tgcctt |
41436215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14377040 - 14376935
Alignment:
| Q |
1 |
tctaccgatataattttgttctccaagttgcaaagaatccatatcgcccaagcttgtatcatgtttaaacttagaccataggtaacagctagaccagcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
14377040 |
tctaccgatataattttgttctccaagttgcaaagtgtcaatatcatccaagcttgtattatgtttaaatttagaccataggtaacagctagaccagcaa |
14376941 |
T |
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| Q |
101 |
tgcctt |
106 |
Q |
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|||||| |
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| T |
14376940 |
tgcctt |
14376935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 14238372 - 14238452
Alignment:
| Q |
141 |
ttatgctcaacttctgattacacaagcagagtaaatatttattgatatatgataccggacatgaattatgtacctggattc |
221 |
Q |
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| T |
14238372 |
ttatgctcaacttctgattacacaagcagagtaaatatttattgatatacgataccggacatgaattatgtacctggattc |
14238452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 32119031 - 32119090
Alignment:
| Q |
149 |
aacttctgattacacaagcagagtaaatatttattgatatatgataccggacatgaatta |
208 |
Q |
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||||||| | |||||||||||||||||| || |||||||||||||||||||| ||||||| |
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| T |
32119031 |
aacttctcaatacacaagcagagtaaattttgattgatatatgataccggacttgaatta |
32119090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22743286 - 22743250
Alignment:
| Q |
1 |
tctaccgatataattttgttctccaagttgcaaagaa |
37 |
Q |
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||||| |||||||||||||||||||| |||||||||| |
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| T |
22743286 |
tctacagatataattttgttctccaaattgcaaagaa |
22743250 |
T |
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