View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19097_low_90 (Length: 237)
Name: NF19097_low_90
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_90 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1868658 - 1868895
Alignment:
| Q |
1 |
ctctaactatgcctccacaagcagctttagctgaattttttatgtaggctccatcagtgttaatcttgagccaattgaagagaggagggatccataaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868658 |
ctctaactatgcctccacaagcagctttagctgaattttttatgtaggctccatcagtgttaatcttgagccaattgaagagaggagggatccataaaac |
1868757 |
T |
|
| Q |
101 |
ttcaatgatgagaggagcctttggagggtggatgttaatgttcaaagctttaagga-tgcaaaatccggtcatgttgactgaagaacaaagtttagtagt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1868758 |
ttcaatgatgagaggagcctttggagggtggatgttaatgttcaaagctttaaggattgcaaaattcggtcatgttgactgaagaacaaagtttagtagt |
1868857 |
T |
|
| Q |
200 |
gttccctgtcatggaaacattggcaattatagtgatga |
237 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1868858 |
gttccctgtcatggaaacattagcaattatagtgatga |
1868895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 24679230 - 24679178
Alignment:
| Q |
78 |
aagagaggagggatccataaaacttcaatgatgagaggagcctttggagggtg |
130 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
24679230 |
aagataggagggttccataaaacttcaatgatttgaggtgccttaggagggtg |
24679178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University