View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_91 (Length: 236)
Name: NF19097_low_91
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_91 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 12937293 - 12937503
Alignment:
| Q |
10 |
gcaggatcacagagttccacagcatgaaacccatcctcacaaaaaacagactccacgtgcaccccacgtgcctccaaaatcttcactagctccttttgcc |
109 |
Q |
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| T |
12937293 |
gcaggatcaaagagttccacagcatgaaacccatcctcacaaaaaacagactccacgtgcaccccacgtgcctccaaaatcttcactagctccttttgcc |
12937392 |
T |
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| Q |
110 |
tatccaccaagggatccccaccgtagccgttaacaaagcacctcggcagccgtccgatcttctcaccatgtatcacatccgaaacttttggatcacaata |
209 |
Q |
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| T |
12937393 |
tatccaccaagggatccccaccgtagccgttaacaaagcacctcggcagccgtccgatcttctcaccatgtatcacatccgaaacttttggattacaata |
12937492 |
T |
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| Q |
210 |
cacgtgatccc |
220 |
Q |
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||||||||||| |
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| T |
12937493 |
cacgtgatccc |
12937503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 12944969 - 12945131
Alignment:
| Q |
14 |
gatcacagagttccacagcatgaaacccatcctcacaaaaaacagactccacgtgcaccccacgtgcctccaaaatcttcactagctccttttgcctatc |
113 |
Q |
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||||| ||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||| | |||||||| ||| |||| |
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| T |
12944969 |
gatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgcaccccacgtgccgccaaaatcttcgccagctccttctgcttatc |
12945068 |
T |
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| Q |
114 |
caccaagggatccccaccgtagccgttaacaaagcacctcggcagccgtccgatcttctcacc |
176 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||| |||| |||||| ||||| ||||| |
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| T |
12945069 |
caccaatggatctccaccgtagccattaacaaagcaccttggcaaccgtccaatcttttcacc |
12945131 |
T |
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