View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_93 (Length: 229)
Name: NF19097_low_93
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_93 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 1320594 - 1320372
Alignment:
| Q |
7 |
cagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatcttgaaggttcacaactata |
106 |
Q |
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| T |
1320594 |
cagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatcttgaagcttcacaactata |
1320495 |
T |
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| Q |
107 |
ccctggttacaactatacatcaattgatcaacttcttgatgaatttcttgttgaccctataccccctgcttatggagcttttcaatgaggttattgatta |
206 |
Q |
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| T |
1320494 |
ccctggttacaactatacatcaattgatcaacttcttgataaatttcttgttgaccctataccccctgcttatggagcttttgaatgaggttattgatta |
1320395 |
T |
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| Q |
207 |
acgttggtcagattaataagttt |
229 |
Q |
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| T |
1320394 |
acgttggtcagattaataagttt |
1320372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 1336103 - 1335939
Alignment:
| Q |
7 |
cagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatcttgaaggttcacaactata |
106 |
Q |
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| T |
1336103 |
cagaagatattccaatttccatcgttcatagcatatttgttaaaggcgacatgt---actttgagctagaggaaaatgaccttgaagcttcacaactata |
1336007 |
T |
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| Q |
107 |
ccctggttacaactatacatcaattgatcaacttcttgatgaatttcttgttgaccctataccccctg |
174 |
Q |
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| T |
1336006 |
tccaaattacaactacacatccattgatcaacttcttgataaatttcttgttgatcctccaccccctg |
1335939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 1264384 - 1264496
Alignment:
| Q |
63 |
aactttgagctagaggaagatgatcttgaaggttcacaactataccctggttacaactatacatcaattgatcaacttcttgatgaatttcttgttgacc |
162 |
Q |
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| T |
1264384 |
aactttgagctagaggaagatgaccttgaagcttcacaactatatcctaattataattacatgtccattgatcaacttcttgataaatttttggttgatc |
1264483 |
T |
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| Q |
163 |
ctataccccctgc |
175 |
Q |
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| T |
1264484 |
ctccaccccctgc |
1264496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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