View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19097_low_94 (Length: 227)
Name: NF19097_low_94
Description: NF19097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19097_low_94 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7023841 - 7023615
Alignment:
| Q |
1 |
ttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgctaggctttcccatatggct |
100 |
Q |
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| T |
7023841 |
ttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttgatattccttgctaggctttcccatatggct |
7023742 |
T |
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| Q |
101 |
ttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatagctcacggtactccattt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7023741 |
ttatctttcccacaaagatacttacctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatagctcacggtactccattt |
7023642 |
T |
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| Q |
201 |
cattatgcttatgtttagcaaaggcat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
7023641 |
cattatgcttatgtttagcaaaggcat |
7023615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7031230 - 7031006
Alignment:
| Q |
1 |
ttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgctaggctttcccatatggct |
100 |
Q |
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||||||| |||||||||||||||| ||||||||| ||||| |||||||| || | ||||| ||||||||| | || |||| |||||||||||||| | |
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| T |
7031230 |
ttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttgcctggctttcccatatgtcc |
7031131 |
T |
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| Q |
101 |
ttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatagctcacggtactccattt |
200 |
Q |
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| T |
7031130 |
ttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatcgaccatcttctttgatagctcatagtactccattt |
7031031 |
T |
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| Q |
201 |
cattatgcttatgtttagcaaaggc |
225 |
Q |
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| T |
7031030 |
cgagatgctcatgtttagtaaaggc |
7031006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7075023 - 7075249
Alignment:
| Q |
1 |
ttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgctaggctttcccatatggct |
100 |
Q |
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||||| |||||||||||||||||| ||||||||| | ||||| |||||| || | ||||| ||||||| | |||||||| | ||||||||||||||||| |
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| T |
7075023 |
ttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatctgctctattttaagattccttgattggctttcccatatggct |
7075122 |
T |
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| Q |
101 |
ttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatagctcacggtactccattt |
200 |
Q |
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||||||||||||| |||| |||||||||| | ||||||| ||||||||||| | | | ||| ||||| ||| ||||||| | ||||||||||| |
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| T |
7075123 |
ttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatccaccattttctttgatagcttatagtactccattt |
7075222 |
T |
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| Q |
201 |
cattatgcttatgtttagcaaaggcat |
227 |
Q |
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|| |||||| |||||| |||||||| |
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| T |
7075223 |
caagatgcttttgtttattaaaggcat |
7075249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 7036939 - 7036786
Alignment:
| Q |
1 |
ttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgctaggctttcccatatggct |
100 |
Q |
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|
||||| |||||||||||||||||| ||||||||| | |||||||||||| || | ||||| ||||||| | |||||||| | || |||||||||||||| |
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| T |
7036939 |
ttcataataatcaagattagtgtatatcaatctaaaaacatcatggacattttcaatctgctctattttaagattccttgattgggtttcccatatggct |
7036840 |
T |
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| Q |
101 |
ttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacacct |
154 |
Q |
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||||||||||||| |||| |||||||||| | ||||||| ||||||||||| |
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| T |
7036839 |
ttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacct |
7036786 |
T |
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