View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19098_high_9 (Length: 210)
Name: NF19098_high_9
Description: NF19098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19098_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 23240889 - 23240718
Alignment:
| Q |
25 |
gcagagacttgaagaagaacaaaatggttatataggttttctaattactttgaattataagaatctctttatgctatatttttcatatttattaatacat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
23240889 |
gcagagacttgaagaagaacaaaatggttatatatgttttctaattactacgaattataacaatatctttatgttatatttttcatatttattaatacat |
23240790 |
T |
|
| Q |
125 |
gtaatatgtttgtgttattttgcagaaattacagcaagattttgctaaatatttacaacataatgtatgtga |
196 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23240789 |
gtaatatgtttgtgttattttgcataaattacagcaagattttgctaaatatttacaacataatgtatgtga |
23240718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 21644343 - 21644262
Alignment:
| Q |
25 |
gcagagacttgaagaagaacaaaatggttatataggttttctaattactttgaattataagaatctctttatgctatatttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
21644343 |
gcagagacttgaagaagaacaaaatgtttatataggttttctaattactttgaattataacaatctctttatgttatatttt |
21644262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University