View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19098_low_4 (Length: 317)
Name: NF19098_low_4
Description: NF19098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19098_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 129 - 302
Target Start/End: Complemental strand, 42076085 - 42075913
Alignment:
| Q |
129 |
tacttcataaaattaccttaatgagttaattgatgttgtgttatgttttaacaagctgttctannnnnnnngttggttgatttgattacaggcagatgtt |
228 |
Q |
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| T |
42076085 |
tacttcataaaattaccttaatgagttaattgatgttgtgttatgttttaacaagttgttct-ttttttttgttggttgatttgattacaggcagatgtt |
42075987 |
T |
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| Q |
229 |
tgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatat |
302 |
Q |
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| T |
42075986 |
tgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatat |
42075913 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 4493507 - 4493594
Alignment:
| Q |
217 |
caggcagatgtttgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatattg |
304 |
Q |
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| T |
4493507 |
caggctgatgtttgtcatgcgtatcaattgttgaggaaaggtggcttgaaagaagaaaacattattgttttcatgtatgatgatattg |
4493594 |
T |
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