View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19098_low_5 (Length: 282)
Name: NF19098_low_5
Description: NF19098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19098_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 39611841 - 39612107
Alignment:
| Q |
1 |
tccactctcataaacaccaccctcagagacaattaaaatttcctgcaaatcaactaattaagcatataagttccataacaggacaattaactaagtagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39611841 |
tccactctcataaacaccaccctcagagacaattaaaatttcctgcaaatcaactaattaagcatataagttccataacaggacaattaactaagtagtg |
39611940 |
T |
|
| Q |
101 |
caaaattacaacatagaaaaactaagtagtgcaaaatattatcaagacattatttctcattcaacatgataataacagggacaataaagtaataaattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39611941 |
caaaattacaacatagaaaaactaagtagtgcaaaatattatcaagacattatttctcattcaacatgataataacagggacaataaagtaataaattct |
39612040 |
T |
|
| Q |
201 |
atataccttaaaacacaaattgggctttgaagagtgacaaccattctgagtcatattctgttaacaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39612041 |
atataccttaaaacacaaattgggctttgaagagtgacaaccattctgagtcatattctgttaacaa |
39612107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University