View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19099_high_2 (Length: 956)
Name: NF19099_high_2
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 498 - 952
Target Start/End: Complemental strand, 55011867 - 55011404
Alignment:
| Q |
498 |
aaagcggattgtaaatgtaaagtaaaccggcacagttatctaggaagaacgcacgatgattttccatttcaataaattgattt---tatgaataccgtaa |
594 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55011867 |
aaagcggattgtaaatgtaaa-taaaccggcacagttatctaggaagaacgcacgatgattttccatttcaataaattgatttatgaatgaataccgtaa |
55011769 |
T |
|
| Q |
595 |
ataaattatgcaaccnnnnnnntaaattaaggaaga-gtgaaaagt------ccgtgagtgagtgaacccaacgattgagtaaaatgaaaaatacctgaa |
687 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55011768 |
ataaattatgcaaccaaaaaaataaattaaggaagaggtgaaaagtccgtgaccgtgagtgagtgaacccaacgattgagtaaaatgaaaaatacctgaa |
55011669 |
T |
|
| Q |
688 |
caaaaatgcggttagactgagaaacagtcttaagcaaataatcagtactccaacgaattgcgaccaaagcgtttctgagttcattaggaggcatgttttc |
787 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55011668 |
caaaaatgcggttagactgagaaacagtcttaagcaaataatcagtactccaacgaattgcgaccaaagcgtttctgagttcattaggaggcatgttttc |
55011569 |
T |
|
| Q |
788 |
accaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaaccgccagtaaga |
887 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55011568 |
accaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaaccgccagtaaga |
55011469 |
T |
|
| Q |
888 |
tcagtgttgtaagtccacccatcactcaaacctgaattcgcacgccacttctgtctctgctcctc |
952 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55011468 |
tcagtgttgtaagtccacccatcactcaaacctgaattcgcacgccacttctgtctctggtcctc |
55011404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 55012344 - 55011885
Alignment:
| Q |
19 |
ctcccaacagttgtggtctgagattgggtcacccacctaatagtacaatgtttttaattagg-------tga---------acatttttgaagattaaac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
55012344 |
ctcccaacagttgtggtctgagattgggtcacccacctaatagtacaatgtttttaattagtcattttttgatatctatctaatattttgaagattaaac |
55012245 |
T |
|
| Q |
103 |
aaaagtgaaaagaattctcattttaaaaattggatggaagatgagtaacactgccatgtttggcgcgtgggggacgtactagtatac---acagttaagg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
55012244 |
aaaagtgaaaagaattctcattttaaaaattggatggaagatgagtaacactgccatgtttggcgcgtgggtgacgtactagtatactacacagttaagg |
55012145 |
T |
|
| Q |
200 |
aaatggtaaagtaacgaaatggagtatggcatttattttgaagacagttgcaatgccgatgaaattcacggacttcgaggatacgaagtggtccacataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55012144 |
aaatggtaaagtaacgaaatggagtattgcatttatttagaagacagttgcaatgccgatgaaattcacggactttgaggatacgaagtggtccacataa |
55012045 |
T |
|
| Q |
300 |
tcacacggaaattttt-tgttcaaaatgcacttttattttacataaacctttgtagtgaacgtgaagtgatgacaaaaataaagggaattgtcaaaatca |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55012044 |
tcacacggaaatttttgtgttcaaaatgcacttttattttacataaacctttgta------gtgaagtgatgacaaaaataaagggaaatgtcaaaatca |
55011951 |
T |
|
| Q |
399 |
tcattttttcttaaagtaacgactaaacatggtaagtagtagtgactaaaattactagtacctatt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55011950 |
tcattttttcttaaagtaacgactaaacatggtaagtagtagcgactaaaattactagtacctatt |
55011885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 789 - 877
Target Start/End: Complemental strand, 44152068 - 44151980
Alignment:
| Q |
789 |
ccaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttgatgttatcaccggcgtcgtagtaacc |
877 |
Q |
| |
|
||||| |||||||||||||| | ||||| ||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||| |
|
|
| T |
44152068 |
ccaaaatcaatcacactccaagctaacatcgtcgttgtaaacgccatcggaaacccgaactttatgttgtcgccggcgtcgtagtaacc |
44151980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 852
Target Start/End: Original strand, 39419534 - 39419599
Alignment:
| Q |
787 |
caccaaactcaatcacactccatgacaacattgtcgtcgtaaacgccatcggaaacccaaacttga |
852 |
Q |
| |
|
||||||||||||| ||||||||||| | ||| || || ||||| ||||| ||||| |||||||||| |
|
|
| T |
39419534 |
caccaaactcaataacactccatgaaagcatagtggtagtaaaagccataggaaaaccaaacttga |
39419599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University