View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_high_20 (Length: 353)
Name: NF19099_high_20
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 1929525 - 1929851
Alignment:
| Q |
1 |
tgaggaggagcacagagttgagaaatggaagaagcgagtttgatgcatcgttgatgagtttgagaccatgtgtaggtgatatcgttgtagatgatggaga |
100 |
Q |
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| T |
1929525 |
tgaggagaaacaccgagttgagaaatggaagaagcgagtttgatgcatcgttgatgagtttgagaccatgtgtaggtgacatcgttgtagatgatggaga |
1929624 |
T |
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| Q |
101 |
ctttgttactgtaaacaatggccgaacgttccaaaaagctgattggagtgagaggaacgtagttagcgttgcattggatagtaccttccatcgtcacctt |
200 |
Q |
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| T |
1929625 |
ctttgttactgtaaacaatggctgaacgttccaaaaagctgattggagtgagaggaacgtagttagcgttgcattggatagtaccttccatcgtcacctt |
1929724 |
T |
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| Q |
201 |
ctaactgtttgatcttttgtctgaaaagaaacacgtttgatagatta-tagatagaaccgtatagttcacgggatcatatcatatcatatcatatgatcg |
299 |
Q |
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| T |
1929725 |
ctaactgtttgatcttttgtctgaaaagaaacacgtttgatagattattagatagaaccgtatagttcacgggatcatatcatatc----------atcg |
1929814 |
T |
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| Q |
300 |
tgtatttacccccatattgcttgtggatggatgtcat |
336 |
Q |
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| T |
1929815 |
tgtatttacccccatattgcgtgtggatggatgtcat |
1929851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 1947815 - 1947990
Alignment:
| Q |
16 |
agttgagaaatggaagaagcgagtttgatgcatcgttgatgagtttgagaccatgtgtaggtgatatcgttgtagatgatggagactttgttactgtaaa |
115 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| || | ||| |||||||| || ||||||| ||| |||| |
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| T |
1947815 |
agttgagaaattgaagaagcaagtttgatgcatcgttgatgagtttgagaccacgtgtaagtcacatcaccatagatgatagaaactttgtcactataaa |
1947914 |
T |
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| Q |
116 |
caatggccgaacgttccaaaaagctgattggagtgagaggaacgtagttagcgttgcattggatagtaccttccat |
191 |
Q |
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| T |
1947915 |
caatggctgaacgttccaagaagcttattggagtgagaggaacatagttggcgttgcacttgatactaccctccat |
1947990 |
T |
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