View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_high_22 (Length: 340)
Name: NF19099_high_22
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 38793781 - 38794070
Alignment:
| Q |
17 |
atttgcactaaactcaacgaataatggcagtgagttataattataaagacgttggtttatttaaacttttataatcaaaggatactcttacaagttcaaa |
116 |
Q |
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| T |
38793781 |
atttgcactaaactcagcgaataatggcagtgagttataa------agacgttggtttatttaaacttttataatcaaaggatactcttacaagttcaaa |
38793874 |
T |
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| Q |
117 |
gaataaatatgtgttccacttcacaatttatatccatgtttatgtagtttccaaattttgtttggacgacacatagaataaggggaagccattctatttg |
216 |
Q |
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| T |
38793875 |
gaataaatatgtgttccacttcacaatttatatccatgtttatgtagtttccaaattttgtttggac---acatagaataaggggaagccattctatttg |
38793971 |
T |
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| Q |
217 |
tttttggttacctcctctatcaagatatgatgatttatcttgagtatttagttatgaatatatactggcaagagactattaagaagaaattaactagac |
315 |
Q |
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| T |
38793972 |
tttttggttacctcctctatcaagatatgatgatttatcttgagtatttagttatgaatatatactggcaagagactattaagaagaaattaactagac |
38794070 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 22069087 - 22069020
Alignment:
| Q |
125 |
atgtgttccacttcacaatttatatccatgtttatgtagtttccaaattttgtttggacgacacatag |
192 |
Q |
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| T |
22069087 |
atgtgatccacctcacattttatatccttgtttatgtagttttcaaattttgtttagaggacaaatag |
22069020 |
T |
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