View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19099_high_4 (Length: 778)

Name: NF19099_high_4
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19099_high_4
NF19099_high_4
[»] scaffold0272 (1 HSPs)
scaffold0272 (1-772)||(2139-2910)
[»] chr4 (5 HSPs)
chr4 (331-724)||(5037956-5038356)
chr4 (41-521)||(1611238-1611722)
chr4 (332-402)||(13725842-13725912)
chr4 (353-436)||(26728809-26728892)
chr4 (41-108)||(53561928-53561995)
[»] chr3 (2 HSPs)
chr3 (466-750)||(47644394-47644688)
chr3 (351-400)||(48721701-48721750)
[»] chr7 (4 HSPs)
chr7 (611-750)||(34514821-34514961)
chr7 (294-483)||(34800098-34800287)
chr7 (351-596)||(11888908-11889144)
chr7 (279-312)||(26156703-26156736)
[»] chr8 (1 HSPs)
chr8 (332-402)||(10909517-10909587)
[»] chr6 (2 HSPs)
chr6 (294-471)||(15858393-15858570)
chr6 (42-158)||(15858141-15858257)
[»] chr2 (2 HSPs)
chr2 (356-399)||(34326254-34326297)
chr2 (278-311)||(14849237-14849270)


Alignment Details
Target: scaffold0272 (Bit Score: 740; Significance: 0; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 1 - 772
Target Start/End: Original strand, 2139 - 2910
Alignment:
Q  1 gagtactaattcggtggagcaaggcgtggtttttgattccatttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2139 gagtactaattcggtggagcaaggcgtggtttttgattccatttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgat 2238  T
Q  101 agaattccgtcaaaagtgaatttggcgtatagacatgtgttacctccggaggcttctctcaactgtgatttatatttgaggagggctgagtcgacaaacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2239 agaattccgtcaaaagtgaatttggcgtatagacatgtgttacctccggaggcttctctcaactgtgatttatatttgaggatggctgagtcgacaaacc 2338  T
Q  201 atctgtttattcacttgtcttttgcttcagaagtgtggcagggtttgttcggctggcaggatttcagctttgtgttacctccgaatttgttcattcattg 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2339 atctgtttattcacttgtcttttgcttcagaagtgtggcaaggtttgttcggctggcaggatttcagctttgtgttacctccgaatttgttcattcattg 2438  T
Q  301 ggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgat 400  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2439 ggagtgttggagtgggggtgaatcaaagaagaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgat 2538  T
Q  401 cgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgattaaggttttatcgtggagatgagtgttgagtcgaatgaatatgtcggcga 500  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2539 cgcatctttacaaatacaatttgtggggtagtggaggtggtagaggcgattaaggttttatcgtggagatgggtgttgagtcgaatgaatatgtcggcga 2638  T
Q  501 gtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgtg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2639 gtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgtg 2738  T
Q  601 cagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggtttttctgcctacaagcttg 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2739 cagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggtttttctgcctacaagcttg 2838  T
Q  701 atgtcatgcgctgtgggagtttttgttgtagttttgtgaggtttctggtaaattttgtattgtctctgtgct 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2839 atgtcatgcgctgtgggagtttttgttgtagttttgtgaggtttctggtaaattttgtattgtccctgtgct 2910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 331 - 724
Target Start/End: Original strand, 5037956 - 5038356
Alignment:
Q  331 gaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtg 430  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||| |||||||||| ||||||    ||| || ||||  |||||| |||||||||||    
T  5037956 gaagattcgtaaaggttactggttgatttggcatgccaaggtttggaatatttggaggctgagaacccgtcgtatttttaataatacagtttgtggggtg 5038055  T
Q  431 gtggaggtggtggaggcgattaaggttttatcgtggagatgagtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgatgttggaacccta 530  Q
    | ||||  ||||||||||||||||||||||||||||||||| ||||||||||| ||| || || ||||||||||||||||| |||| || |||| |||||    
T  5038056 gcggagacggtggaggcgattaaggttttatcgtggagatgggtgttgagtcgtatgcatgtgccggcgagtttgtattacaaatggtgctggagcccta 5038155  T
Q  531 gggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgtgcagtttgcgttttggtgtactgcagtttgg 630  Q
    |||||||||||||||||| |||| |   |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |    
T  5038156 gggagtgtctgattcgttaagggagccatttcggaagatcggaggttgaggctggggtatgcggtgtgtgcagtgtgcggtttggtgtactgcagttttg 5038255  T
Q  631 tatatgttagcctcaggtctgctgttctgttagcagtggc------agttttctggttttt-ctgcctacaagcttgatgtcatgcgctgtgggagtttt 723  Q
    ||||||||||||||| ||||||||||||||||||||||||       |||||||||||||| || |||||| ||||  |||||||||||||||||| |||    
T  5038256 tatatgttagcctcaagtctgctgttctgttagcagtggctgttttcgttttctggtttttgcttcctacaggctttctgtcatgcgctgtgggagcttt 5038355  T
Q  724 t 724  Q
    |    
T  5038356 t 5038356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 41 - 521
Target Start/End: Original strand, 1611238 - 1611722
Alignment:
Q  41 atttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgatagaattccgtcaaaagtgaatttggcgtatagacatgtgt 140  Q
    ||||||||||| ||||| ||||||||||| ||||  || || ||||||||  ||||||||||||| ||||||||||||||||||||| | || ||||||     
T  1611238 atttggaaaagtccggcaccgtccaaagtggtggccttctcttggaagctttttcatgatagaataccgtcaaaagtgaatttggcgcacaggcatgtgc 1611337  T
Q  141 tacctccggaggcttctctcaactgtgatttatatttgaggagggctgagtcgacaaaccatctgtttattcacttgtctttt-gcttcagaagtgtggc 239  Q
    | || || || |||||| | || |||| ||| | |  | ||| |  ||||||| |||| ||| | |||||||||| || | || || || || |||||||    
T  1611338 ttccaccagaagcttctttaaattgtgttttgtgtgaggggaagattgagtcggcaaatcatttatttattcact-gtgtgttcgcctcggaggtgtggc 1611436  T
Q  240 agggtttgttcggct-ggcaggatttcagctttgtgttacctccgaatttgttcattcattgggagtgttggaatgggggtgaatcaaagatgaagattc 338  Q
    | |||||  | | || |||   |||||| |||||||| ||| ||||| || | | ||||  ||||||||||||| || |  |   |||| | |||| |||    
T  1611437 aaggttttgttgacttggcttaatttcaactttgtgtcaccgccgaacttatgcgttcacggggagtgttggaacggagcagtgacaaataagaaggttc 1611536  T
Q  339 gtaaaggttactggttgatttggcacgccgcggttt----ggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtggtgg 434  Q
    ||||||| ||    |||||||| || ||||||||||    ||||||||||||||||||| ||||||||||| ||||  |||  ||||||||||| || ||    
T  1611537 gtaaagggtatcaattgatttgccatgccgcggtttaattggagtatttggagggtgaggaatgatcgcatttttaataatgtaatttgtggggcggcgg 1611636  T
Q  435 aggtggtggaggcgattaaggttttatcgtggagatgagtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgatgtt 521  Q
    || | |||||||||||||||||||| | |||||| ||  ||||||||||  ||||  || |||||||||||| ||||||||| ||||    
T  1611637 agttagtggaggcgattaaggttttgttgtggaggtgcatgttgagtcgtttgaacgtgccggcgagtttgt-ttacgaatggtgtt 1611722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 332 - 402
Target Start/End: Original strand, 13725842 - 13725912
Alignment:
Q  332 aagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg 402  Q
    |||||||||| |||||   ||||||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  13725842 aagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcg 13725912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 26728809 - 26728892
Alignment:
Q  353 ttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtggtggag 436  Q
    ||||||||||| |||| ||| |||||||| ||||||| ||||||||| || || ||||  ||| ||| ||||||||||| ||||    
T  26728809 ttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttttaacaattcaaattgtggggtggaggag 26728892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 53561928 - 53561995
Alignment:
Q  41 atttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgatagaattcc 108  Q
    |||||||| || |||||||||||||| ||||| || || || ||||| ||||| ||||||||||||||    
T  53561928 atttggaagagtccggcgccgtccaaggtcgttgtcttctcgtggaaactcctccatgatagaattcc 53561995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 466 - 750
Target Start/End: Complemental strand, 47644688 - 47644394
Alignment:
Q  466 gagatgagtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcgga 565  Q
    |||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||| | |||||||||    
T  47644688 gagatgggtgttgagtcgaatgaatgtgtcggcgggtttgtattacgaatggtgttggagccctagggagtgtctgattcgttaagggagaggtttcgga 47644589  T
Q  566 agatcggaggttgaggctggggtatgcggtgcgtgcagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagca 665  Q
    |||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47644588 agatcggaggttgaggctggggtatgcggtgcatgcagtttcagatttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagca 47644489  T
Q  666 gtggcag--------ttttctggttttt-ctgcctacaagcttgatgtcatgcgctgtgggag--tttttgttgtagttttgtgaggtttctggta 750  Q
    |||||||        ||||||||||||| || |||||| ||||| |||||||||||| |||||  |||||||||  | ||||||||||||||||||    
T  47644488 gtggcagtttttttgttttctggtttttgcttcctacacgcttgctgtcatgcgctgagggagcttttttgttgctg-tttgtgaggtttctggta 47644394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 48721701 - 48721750
Alignment:
Q  351 ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgat 400  Q
    |||| |||||||| || ||||||||||||||||||||||  |||||||||    
T  48721701 ggttaatttggcatgcggcggtttggagtatttggagggcaagaaatgat 48721750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 611 - 750
Target Start/End: Complemental strand, 34514961 - 34514821
Alignment:
Q  611 tttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggttttt-ctgcctacaagcttgatgtcatgc 709  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||||||||||||| || | |||| ||||  ||||||||    
T  34514961 tttggtgtactgcagttttgtatatgttagcctcaggtctgctgttctgttagcagtttttgttttctggtttttgcttcttacaggctttctgtcatgc 34514862  T
Q  710 gctgtgggag-tttttgttgtagttttgtgaggtttctggta 750  Q
    | |||||||| |||||||||  | |||||| |||||||||||    
T  34514861 gttgtgggagctttttgttgctg-tttgtggggtttctggta 34514821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 294 - 483
Target Start/End: Complemental strand, 34800287 - 34800098
Alignment:
Q  294 ttcattgggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgag 393  Q
    |||| |||||||| ||||||||||  |  ||||| | |||| |||||||||| ||   |||||||||||| |||||||| |||||||||||||||||| |    
T  34800287 ttcactgggagtgatggaatggggcagtgtcaaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggtgcg 34800188  T
Q  394 aaatgatcgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgattaaggttttatcgtggagatgagtgttgagtcg 483  Q
    ||||||||| |||||||  |||   | |||||| |  | |||| | |||||||||||||||||||| | |||||||||  ||||||||||    
T  34800187 aaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcg 34800098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 351 - 596
Target Start/End: Original strand, 11888908 - 11889144
Alignment:
Q  351 ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgat 450  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||| |||| ||||  |||  ||||||||||        | | |||||||||||    
T  11888908 ggttgatttggcatcccgcggtttggagtatttggagggcgagaaatgat-gcatttttaacaatttaatttgtggg--------gatagtggaggcgat 11888998  T
Q  451 taaggttttatcgtggagatgagtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttca 550  Q
    ||||||||| |||||||| ||  ||||||||||  ||||  |  | |||||||||| ||| ||||  ||||||  ||  || |||||||| || | || |    
T  11888999 taaggttttgtcgtggaggtggatgttgagtcgtttgaaggtaccagcgagtttgttttatgaatagtgttggtgcctaagagagtgtctcatgctttaa 11889098  T
Q  551 gggtgtggtttcggaagatcggaggttgaggctggggtatgcggtg 596  Q
     || |  ||||||| |   |||||||||||||||||||||||||||    
T  11889099 tggggctgtttcggtatcgcggaggttgaggctggggtatgcggtg 11889144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 26156703 - 26156736
Alignment:
Q  279 ctccgaatttgttcattcattgggagtgttggaa 312  Q
    ||||||||||||| ||||||||||||||||||||    
T  26156703 ctccgaatttgtttattcattgggagtgttggaa 26156736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 10909587 - 10909517
Alignment:
Q  332 aagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg 402  Q
    |||||||||| |||||   ||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  10909587 aagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcg 10909517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 294 - 471
Target Start/End: Original strand, 15858393 - 15858570
Alignment:
Q  294 ttcattgggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgag 393  Q
    |||||||||||||||||| |||||  || ||||| | |||| | || || || | | ||||||||||||| || ||||||||||||||||||||||||||    
T  15858393 ttcattgggagtgttggagtggggcggagtcaaataagaaggtccgaaacgggttcaggttgatttggcatgctgcggtttggagtatttggagggtgag 15858492  T
Q  394 aaatgatcgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgattaaggttttatcgtggagatg 471  Q
    ||| || || || ||||    |  || |||||  ||||||||| | ||||||||||| |||||| | |||||||||||    
T  15858493 aaacgaccgtatttttaacggtgtaaattgtgaagtggtggagttagtggaggcgatcaaggttctgtcgtggagatg 15858570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 15858141 - 15858257
Alignment:
Q  42 tttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgatagaattccgtcaaaagtgaatttggcgtatagacatgtgtt 141  Q
    |||||||||| ||||| ||||| ||||| ||||  || || |||||||| |||||||||||||| || || |||| ||| ||||||  |||||| ||| |    
T  15858141 tttggaaaagtccggcaccgtctaaagttgtggcattctcttggaagcttcttcatgatagaataccctctaaagcgaacttggcggttagacaggtgct 15858240  T
Q  142 acctccggaggcttctc 158  Q
    |||||||||||||||||    
T  15858241 acctccggaggcttctc 15858257  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 34326254 - 34326297
Alignment:
Q  356 atttggcacgccgcggtttggagtatttggagggtgagaaatga 399  Q
    |||||||||||||||||||||| ||||||||| || ||||||||    
T  34326254 atttggcacgccgcggtttggactatttggagagttagaaatga 34326297  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 14849270 - 14849237
Alignment:
Q  278 cctccgaatttgttcattcattgggagtgttgga 311  Q
    |||||||||||||| |||||||||||||||||||    
T  14849270 cctccgaatttgtttattcattgggagtgttgga 14849237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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