View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_high_6 (Length: 538)
Name: NF19099_high_6
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 520
Target Start/End: Original strand, 29564709 - 29565205
Alignment:
| Q |
16 |
cttactacgtacgtactactgccatactcttcatctcttttaatatctacgttagtttctctt-gtttcaaattctaatattagattatcgttttgttta |
114 |
Q |
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| T |
29564709 |
cttactacgtacgtactactgccatactcttcatctcttttaatatctacgttagtttctctttgtttcaaattctaatattagattatcgttttgttta |
29564808 |
T |
|
| Q |
115 |
aatgcatgcattcatatttttaaatatattaagtcaaggtgaaatgaaattgaatatatattttacgtaactttctatcttgtttgtctccctcaagaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29564809 |
aatgcatgcattcatatttttaaatatattaagtcaaggtgaaatgaaattgaatatatattttacgtaactttctatcttgtttgtctccctcaagaac |
29564908 |
T |
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| Q |
215 |
aataggactgagattctcttgggtttctcattgtgtcgtccattatac--attgatggcttaattatacgacataaatagctggagcaagtaatatttgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29564909 |
aataggactgagattctcttgggtttctcattgt---gtccattatacatattgatggcttaattatacgacataaatagctggagcaagtaatatttgg |
29565005 |
T |
|
| Q |
313 |
accaacatgcatgtttaaatatatacacagacacgagacggaacgtgtatcaagaacacaggtgtgcttaattacacttccgatttcaactgcttctttg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29565006 |
accaacatgcatgtttaaatatatacacagacacgagacggaacgtgtatcaagaacacaggtgtgcttaattacacttccgatttcaactgcttctttg |
29565105 |
T |
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| Q |
413 |
cttttgtttttagcataagctgtattctcatatgtatggttttgaatttcagcattgattttacttctttctttacttttatatgggtgtttcaatttga |
512 |
Q |
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|||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29565106 |
cttttgtttttagcataa--------ttaagctgtatggttttgaatttcagcattgattttacttctttctttacttttagatgggtgtttcaatttga |
29565197 |
T |
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