View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_high_7 (Length: 537)
Name: NF19099_high_7
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 23 - 412
Target Start/End: Original strand, 4109228 - 4109617
Alignment:
| Q |
23 |
tgtccatgagttccaactcctcctcttccttatccatagacgttgatgaatcagcagaaacacgcatccaccgtctcatatcagaacatccagttatcat |
122 |
Q |
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| T |
4109228 |
tgtccatgagttccaactcctcctcttccttatccatagacgttgatgaatcagcagaaacacgcatccaccgtctcatatcagaacatccagttatcat |
4109327 |
T |
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| Q |
123 |
cttcacacgttcctcttgctgcatgtgtcatgtcatgaagaagcttctctccaccataggtgttaatcccaccgtcatcgaattagacgacaacgagatc |
222 |
Q |
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| T |
4109328 |
cttcacacgttcctcttgctgcatgtgtcatgtcatgaagaagcttctctccaccataggtgttaatcccaccgtcatcgaattagacgacaacgagatc |
4109427 |
T |
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| Q |
223 |
gcctctttgtcgtctgacgatgacgatgatcttgcttccgtcctccgtaaccgctctcctgctgtcttcatcggtggtgcttgcgttggtggtcttgaga |
322 |
Q |
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| T |
4109428 |
gcctctttgtcgtctgacgatgacgatgatcttgcttccgtcctccgtaaccgctctcctgctgtcttcattggtggtgcttgcgttggtggtcttgaga |
4109527 |
T |
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| Q |
323 |
gtcttgttgctcttcatgttggtggtcatcttgttcctaaactcgttcaagttggtgctctttatgtatgatattaatatcaaatatcta |
412 |
Q |
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| T |
4109528 |
gtcttgttgctcttcatgttggtggtcatcttgttcctaaactcgttcaagttggtgctctttatgtatgatattaatatcaaatatcta |
4109617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 441 - 523
Target Start/End: Original strand, 4109646 - 4109728
Alignment:
| Q |
441 |
agttaaatcaaatcaattatcattatcattaatattactattcacctaaatagcccaaaataatataactaattgtataattt |
523 |
Q |
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| T |
4109646 |
agttaaatcaaatcaattatcattatcattaatattactattcacctaaatagcccaaaataatataactaattgtataattt |
4109728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 48154189 - 48154041
Alignment:
| Q |
77 |
cagaaacacgcatccaccgtctcatatcagaacatccagttatcatcttcacacgttcctctt---gctgcatgtgtcatgtcatgaagaagcttctctc |
173 |
Q |
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| T |
48154189 |
cagaaactcgaatcaaccgcctcatatcagaacaccctgtcatcatcttcacccgatcctcctcatgctgcatgtgccatgtcatgaggaatctcctctt |
48154090 |
T |
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| Q |
174 |
caccataggtgttaatcccaccgtcatcgaattagacgacaacgagatc |
222 |
Q |
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| T |
48154089 |
caccatcggcgttcatcccaccgttatccaattggatgacaacgagatc |
48154041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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