View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_1 (Length: 1107)
Name: NF19099_low_1
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 466 - 826
Target Start/End: Original strand, 40121984 - 40122342
Alignment:
| Q |
466 |
ttttgagttcaccaaatgccaaaaagactatacattcattaactgatattgcagattgctgttatcttaaacttgtatccagtagctatgatacttggtt |
565 |
Q |
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| T |
40121984 |
ttttgagttcaccaaatgccaaaaagactatacattcattaactgatattgcagattgctgttatcttaaacttatatccagcagctatgatacttggtt |
40122083 |
T |
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| Q |
566 |
cattttgacattgaataatatgtcttatatatccaattgtactgaagagatggtagataggaaatttggttgtttgtgaaaatgtgtttagttgtt--tg |
663 |
Q |
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| T |
40122084 |
cattttgacattgaataatatgtcttat----ccaattgtactgaagagatggtagataggaaatttggttgtttatgaaaatgtgtttagttgttgttg |
40122179 |
T |
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| Q |
664 |
atccacatcgataagttgtggtgtcccgttaaataagttgatgaatgtcttgagaattatcgtattaaatgtatgtcatgtgaaaggattaccatgtgtt |
763 |
Q |
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| T |
40122180 |
atacacatcgataagttgtggtgtcccgttaaataagttgatgaatgtcttgagaattatcgtattaaatgtatgtcaagtgaaaggattaccatgtgtt |
40122279 |
T |
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| Q |
764 |
gtcaaattgtgaaaaacatgagtgatgctcataatggtgctcattatggagtgacctttgtac |
826 |
Q |
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| T |
40122280 |
gtgaaattgtgaaaaacctgagtgatgctcataatggtgctcattatggagtgacatttgtac |
40122342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 40121595 - 40121973
Alignment:
| Q |
9 |
agcagcacagaccataccactgctaagaacattgttccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgc |
108 |
Q |
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| T |
40121595 |
agcaccacagaccataccactgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgc |
40121694 |
T |
|
| Q |
109 |
cggtgagcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaatatgtacacctagtttgtt |
208 |
Q |
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| T |
40121695 |
cggtgagcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaata---acacctagtttgtt |
40121791 |
T |
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| Q |
209 |
ggaaatgaatttgttctcaccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttccttagc |
308 |
Q |
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| T |
40121792 |
ggaaatgaatttgttctcaccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttctttagc |
40121891 |
T |
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| Q |
309 |
tagatttt-------------ttagaattgtacgcgacgttgattagaattttcagctgctgcgcgtaaactgttcttctat |
377 |
Q |
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| T |
40121892 |
taggtttttagaatggattcatttgaattgtacgggacgtcgattagaattttcagctgctgcgcgtaaactgttcttctat |
40121973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 45 - 299
Target Start/End: Original strand, 40125283 - 40125534
Alignment:
| Q |
45 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
144 |
Q |
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| T |
40125283 |
ccttcccttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40125379 |
T |
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| Q |
145 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
241 |
Q |
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| T |
40125380 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40125476 |
T |
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| Q |
242 |
taactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctg |
299 |
Q |
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| T |
40125477 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaagctg |
40125534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 45 - 302
Target Start/End: Original strand, 40092811 - 40093065
Alignment:
| Q |
45 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
144 |
Q |
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| T |
40092811 |
ccttcccttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40092907 |
T |
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| Q |
145 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
241 |
Q |
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|||||||||||||||||||||||||| |||| |||| ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40092908 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40093004 |
T |
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| Q |
242 |
taactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttc |
302 |
Q |
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| T |
40093005 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaggctgttc |
40093065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 826 - 923
Target Start/End: Original strand, 40122366 - 40122462
Alignment:
| Q |
826 |
cacaagttgtgtgcatattattcatgaaataacatttacttatgtaacgctcgtgttaatgttgtaatatattgtattttggtaatgtagaggtgata |
923 |
Q |
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| T |
40122366 |
cacaagttgtgtgcatattattcatgaaataacatttact-atgtaacgctcgtgttaatgttgtaatatattgtattttggtaatttagaggtgata |
40122462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 943 - 1005
Target Start/End: Original strand, 40122760 - 40122820
Alignment:
| Q |
943 |
gtatgaggcttatataggccttaagccaccaccataaatgaaataatacatgttaacaatttt |
1005 |
Q |
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| T |
40122760 |
gtatgaggcttataa--gccttaagccaccaccatgaatgaaataatacctgttaacaatttt |
40122820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 40093333 - 40093386
Alignment:
| Q |
444 |
ttcaaatttaatttaacatttcttttgagttcaccaaatgccaaaaagactata |
497 |
Q |
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| T |
40093333 |
ttcaaatttaatttaacttttattttgatttcatcaaatgccataaagactata |
40093386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 994 - 1061
Target Start/End: Original strand, 43941327 - 43941396
Alignment:
| Q |
994 |
gttaacaattttaatgatagttgatt-tttgttttgaaatatcttaaa-ttgtgttccttccaaataatc |
1061 |
Q |
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| T |
43941327 |
gttaacaattttagtgatagccgattctttgttttgaaagatcttaatgttgtgttcctttcaaataatc |
43941396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 991 - 1082
Target Start/End: Original strand, 39435998 - 39436091
Alignment:
| Q |
991 |
catgttaacaattttaatgatagttgattttt-gttttgaaatatcttaaa-ttgtgttccttccaaataatctaattacttgccaaccaaata |
1082 |
Q |
| |
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|||||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||||||||||| ||||||| | |||||||||| |
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| T |
39435998 |
catgttaacaatttcaatgatagctgattttttgtttttaaagctcctgcagttgtgttccttccaaataatccaattactcgtcaaccaaata |
39436091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1046 - 1089
Target Start/End: Complemental strand, 47727530 - 47727487
Alignment:
| Q |
1046 |
ttccttccaaataatctaattacttgccaaccaaataatttgaa |
1089 |
Q |
| |
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||||||| |||||||| |||||||||| |||||||||||||||| |
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| T |
47727530 |
ttccttctaaataatccaattacttgctaaccaaataatttgaa |
47727487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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