View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_11 (Length: 482)
Name: NF19099_low_11
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 26197606 - 26197259
Alignment:
| Q |
21 |
tcctagtccaagctttggtgtaccttatcctttcaaattcatcaaacatattctccaagaacatcaagagatcaaacagcttcaagccggcgcgttccgt |
120 |
Q |
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| T |
26197606 |
tcctagtccaagctttggtgtaccttatcctttcaaattcatcaaacatattctccaagaacatcaagagatcaaacagcttcaagccggcgcgttccgt |
26197507 |
T |
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| Q |
121 |
gagtattcgtcggatgttggcttatctctccgattttcctcctgaaggagaaccatctccttctacaatgagtcctcaatcacaagcaactcagagttag |
220 |
Q |
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| T |
26197506 |
gagtattcgtcggatgttggcttatctctccgattttcctcctgaaggagaaccatctccttctacaatgagtcctcaatcacaagcaactcagagttag |
26197407 |
T |
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| Q |
221 |
aatcaagtttgtatcaagtatggctcaggctgtttgtaaataatttatcttattgtgagtgtagagaggatattgcaaaattagttaaacaattctaagt |
320 |
Q |
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| T |
26197406 |
aatcaagtttgtatcaagtatggctcaggctgtttgtaaataatttatcttattgtgaggttagagaggatattgcaaaattagttaaacaattctaagt |
26197307 |
T |
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| Q |
321 |
aaattatggtggggtcttaaattcttttattcatttagcttttaaatc |
368 |
Q |
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| T |
26197306 |
aaattatggtggggtcttaaattcttttattcatttagcttttaaatc |
26197259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 390 - 471
Target Start/End: Complemental strand, 26197272 - 26197194
Alignment:
| Q |
390 |
ttagcttttaaatcatatagtatcatgtaatatatttatgaatggaattggattggtagtagtttgtttttgtttgtatatt |
471 |
Q |
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| T |
26197272 |
ttagcttttaaatcatata---tcatgtaatatatttatgaatggaattggattggtagtagtttgtttttgtttgtatatt |
26197194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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