View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_12 (Length: 454)
Name: NF19099_low_12
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Original strand, 53233610 - 53234037
Alignment:
| Q |
11 |
agaatattggaccaataatcggtagaagggtcttgtttaataggtaaggcgaagcttaaagttgttgctgacgaagttgaagatggatgatctatttcgt |
110 |
Q |
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| T |
53233610 |
agaatattggaccaataatcggtagaagggtcttgtttaataggtaaggcgaagcttaaagttgttgctgacgaagttgaagatggatgatctatttcgt |
53233709 |
T |
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| Q |
111 |
cggattgaattggttcattgattttggtttctgaaacacaatctgtggaatttttattgttcttgtttgataaacctcctatgggaagagaactatttgc |
210 |
Q |
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| T |
53233710 |
cggattgaattggttcattgattttggtttctgatacacaatctgtggaatttttattgttcttgtttgataaacctcctatgggaagagaacaatttgc |
53233809 |
T |
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| Q |
211 |
aatactctttacgtcgtaccgactcatgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaatatcatacgcttctgcagcttcttct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53233810 |
aatactctttacgtcgtaccgactcatgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaatatcatacgcttctgcagcttcttct |
53233909 |
T |
|
| Q |
311 |
tgagtgcctaaattcataaattaaattgnnnnnnnntgatcaggctatgaatgaaaacgtcaattttctaaatttttatcataaattactagcatgcaga |
410 |
Q |
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| T |
53233910 |
tgagtgcctaaattcataaattaaattgaaaaaaaatgatcaggctatgaatgaaaacgtc-attttctaaatttttatcataaattactagcatgcaga |
53234008 |
T |
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| Q |
411 |
cgaaaattaacgtgcaagtgtgttattat |
439 |
Q |
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| T |
53234009 |
agaaaattaacgtgcaagtgtgttattat |
53234037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 24561648 - 24561746
Alignment:
| Q |
221 |
acgtcgtaccgactcatgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaatatcatacgcttctgcagcttcttcttgagtgcct |
319 |
Q |
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| T |
24561648 |
acgtcgtaacgagtcatgtcaaagtttgttacagcgttgagtcctctgaattttattgctgctatgtcgtatgcttctgcagcctcttcttcagtgcct |
24561746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 41963775 - 41963863
Alignment:
| Q |
221 |
acgtcgtaccgactcatgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaatatcatacgcttctgcagcttcttc |
309 |
Q |
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| T |
41963775 |
acgtcgtaacgattcatgtcaaagtttgttactgcgtttaatcctctgaatttgattgcagctatgtcatatgcttctgcagcctcttc |
41963863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 30618306 - 30618395
Alignment:
| Q |
233 |
ctcatgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaatatcatacgcttctgcagcttcttcttgagtgcctaaa |
322 |
Q |
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| T |
30618306 |
ctcatgtcaaagtttgtaactgcactcagtcctctgaattttattgctgccacatcatatgcctctgctgcctcttcttgagtgcctaaa |
30618395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 7212006 - 7211952
Alignment:
| Q |
266 |
ctaaatttgattgctgcaatatcatacgcttctgcagcttcttcttgagtgccta |
320 |
Q |
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| T |
7212006 |
ctaaacttgattgctgcaatatcatatgcttctgcagcctcttcttgcgtgccta |
7211952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 47754441 - 47754355
Alignment:
| Q |
236 |
atgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaatatcatacgcttctgcagcttcttcttgagtgcctaaa |
322 |
Q |
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|||||||||||||| || |||||| ||| | ||||| |||||||| | |||||| |||||||| ||||| ||||||||||||||| |
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| T |
47754441 |
atgtcaaaatttgtgacagcatttgctccacggaattttattgctgctacatcatatgcttctgctgcttcctcttgagtgcctaaa |
47754355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 4845437 - 4845526
Alignment:
| Q |
235 |
catgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaatatcatacgcttctgcagcttcttcttgagtgcctaaatt |
324 |
Q |
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||||||||| ||||| ||||||||||| || | ||||||||||| || | |||||| ||||| || ||||| |||||||||||| |||| |
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| T |
4845437 |
catgtcaaagtttgtcactgcatttaggccgcggaatttgattgcggctacatcatatgcttcagctgcttcctcttgagtgcctgaatt |
4845526 |
T |
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