View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_14 (Length: 435)
Name: NF19099_low_14
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 29 - 396
Target Start/End: Original strand, 17411696 - 17412063
Alignment:
| Q |
29 |
acataaagaattcgaactaaattgcatacaatataatgtttggatttagtgattttttaccttaacagctcttaaaaaattacatttttgtttcatgtac |
128 |
Q |
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| T |
17411696 |
acataaagaattcgaactaaattgcatacaatataatgtttggatttagtgattttttaccttaacagctcttaaaaaattacatttttgtttcatgtac |
17411795 |
T |
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| Q |
129 |
aagtacaagcatgtaatatactatgacttttaaaatacatgtctctaaaataacaacgaaattattatatcatttcaaagtggtggccatttataactat |
228 |
Q |
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| T |
17411796 |
aagtacaagcatgtaatatactatgacttttaaaatacatgtctctaaaataacaacgaaattattatatcatttcaaagtggtggcaatttataactat |
17411895 |
T |
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| Q |
229 |
acgtcaccaacatttttgcatggacttgaagtaatcatcatactctaattttttatttgagggaccttatactctattcttaatatcattatgctggcta |
328 |
Q |
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| T |
17411896 |
acgtcaccaacatttttgcatggacttgaagtaatcatcatactctaattttttatttgagggaccttatactctattcttaatatcattatgctggcta |
17411995 |
T |
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| Q |
329 |
ttttcaatagaacactaaattaaaggagtgcccatattgagaatgagagtttgtaaaccttccctggt |
396 |
Q |
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| T |
17411996 |
ttttcaatagaacactaaattaaaggagtgcccatattgagaatgagagtttgtaaaccttccctggt |
17412063 |
T |
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