View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19099_low_15 (Length: 429)
Name: NF19099_low_15
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_15 |
 | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 12043614 - 12044017
Alignment:
| Q |
11 |
cataggggcgtgccattgagaattgatgatgtaatcattcactgtagagagaagattatgatgcaggttatggggaatatgaaacaaatcaacaaggggg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12043614 |
cataggggcgtgccattgagaattgatgatgtagtcattcactgtagagagaagattatgatgcaggttatggggaatatgaaacaaatcaacaaggggg |
12043713 |
T |
|
| Q |
111 |
ttccacaccaatcatgagtccagaagttgatcttttggccatcaccaagcaaccatctagagt--tgtttaaaacatgataagcttgagttctaatgcca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12043714 |
ttccacaccaatcatgagtccagaagttgatcttttggccatcaccaagcaaccatctagagtgttgtttaaaacatgataagcttgagttctaatgcca |
12043813 |
T |
|
| Q |
209 |
ctccagactgaataaaaaatatgataacctatgaacttgttatttctgagtactctacttctcaaaaaatctgccgattgattttcagaatgtagcaaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12043814 |
ctccagactgaataaaaaatatgataacctatgaacttgttatttctgagtactctacttctcaaaaaatctgccgattgattttcagaatgtagcaaat |
12043913 |
T |
|
| Q |
309 |
cccagcataacttgagattggtgtcttcatttaatttagatagggatctaataccaagaccaccttcatcaaaaggtgttattggttattataaacaata |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12043914 |
cccagcataacttgagattggtgtcttcatttaatttagatagggatctaataccaagaccaccttcatcaaaaggtgttattggttattataaacaatg |
12044013 |
T |
|
| Q |
409 |
tgtt |
412 |
Q |
| |
|
|||| |
|
|
| T |
12044014 |
tgtt |
12044017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 380
Target Start/End: Complemental strand, 29731 - 29371
Alignment:
| Q |
21 |
tgccattgagaattgatgatgtaatcattcactgtagagagaagattatgatgcaggttatggggaatatgaaacaaatcaac-aagggggttccacacc |
119 |
Q |
| |
|
||||||||||| || |||||||| ||||| |||||||| |||||||| |||||||| | || ||||| ||||| || ||||| || || || || |||| |
|
|
| T |
29731 |
tgccattgagagtttatgatgtagtcattaactgtagaaagaagattgtgatgcagactttgaggaatttgaaataagtcaaccaaaggagtaccgcacc |
29632 |
T |
|
| Q |
120 |
aatcatgagtccagaagttgatcttttggccatcaccaagcaaccatctagagttgtttaaaacatgataagcttgagttctaatgccactccagactga |
219 |
Q |
| |
|
||||||| |||| ||||| || | | ||||| ||||||| |||||| |||||||| || |||||||| ||||||||| |||| |||||||||| ||| |
|
|
| T |
29631 |
aatcatggttccaaaagttaattctatacccatctccaagcagccatctggagttgttcaacacatgataggcttgagttttaataccactccagattga |
29532 |
T |
|
| Q |
220 |
ataaaaaatatgataacctatgaacttgttatttctgagtactctacttctcaaaaaatctgccgattgattttcagaatgtagcaaatcccagcataac |
319 |
Q |
| |
|
| ||||||||||||| ||||| || || || |||||||| |||||||||||||| || | |||| ||||||| |||||||| | || ||||||||||| | |
|
|
| T |
29531 |
agaaaaaatatgatagcctatcaaattattgtttctgagcactctacttctcaagaagtgtgcccattgattgtcagaatgcatcatatcccagcatagc |
29432 |
T |
|
| Q |
320 |
ttgagattggtgtcttcatttaatttagatagggatctaataccaagaccaccttcatcaa |
380 |
Q |
| |
|
||||| |||| ||||||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
29431 |
ttgaggttggctgcttcatttagtttagataaagatctaatacccagaccaccttcatcaa |
29371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University