View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_16 (Length: 426)
Name: NF19099_low_16
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 4707311 - 4706907
Alignment:
| Q |
7 |
tcgaagaaaataatatcattatgacaagtatttcagaaaataggtggtaaaataaaaacaattcatcaaaaccatagtcaatcctcataaacaaatcatt |
106 |
Q |
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| T |
4707311 |
tcgaagaaaataatatcattatgacaagtatttcagaaaataggtggtaaaataaaaacaattcatcaaaaccatagtcaattctcataaacaaatcatt |
4707212 |
T |
|
| Q |
107 |
atttgcattacaaaagctcctaaactattcaacatgttgtctcacatgcataataacaatcaaaactatgattcatagcaagacttagttacaagtgaga |
206 |
Q |
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| T |
4707211 |
atttgcattacaaaagctcctaaactattcaacatgttgtctcacatgcataataacgatcaaaactatgattcatagcaagacttagttacaagtgaga |
4707112 |
T |
|
| Q |
207 |
taggaaaagaaaaggctattgcacactcgtgagaaag-aagactctttaaacaagaatattatccatgaaccttgcgaacttgtatgtggtgaatggatt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4707111 |
gaggaaaagaaaaggctattgcacactcgtgagaaagaaagactctttaaacaacaatattatccatgaaccttgcgaacttgtatgtggtgaatggatt |
4707012 |
T |
|
| Q |
306 |
cctcacgccagattggttgtgcaccgctttgaacaagggtaacatattgtccctcgtttaagtgacctttaatctgcagcatgaagaaaacttttaccaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4707011 |
cctcacgccagattggttgtgcaccgctttgaacaagggtaacatattgtccctcgtttaagtgacctttaatctgcagcatgaagaaaactttcaccaa |
4706912 |
T |
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| Q |
406 |
cattt |
410 |
Q |
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||||| |
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| T |
4706911 |
cattt |
4706907 |
T |
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