View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19099_low_17 (Length: 409)
Name: NF19099_low_17
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 46441658 - 46441878
Alignment:
| Q |
13 |
cagacagctagttgatgatagaaccatctttatgacattttccaaagattgtccggtttatgagaatgaacttagagaattttttacgaggtaccatttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46441658 |
cagacagctagttgatgatagaaccatctttatgacattttccaaagattgtccggtttatgagaatgaacttagggaattttttacgaggtaccatttt |
46441757 |
T |
|
| Q |
113 |
agatttatttatttatgtccatattcatgtacatatatcaaatttcttaattatataaaactttacttatttaattaataatcattatcacatcttacga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46441758 |
agatttatttatttatgtccatattcatgtacatatatcaaatttcttaattatataaaattttaattatttaattaataatcattatcacatcttacga |
46441857 |
T |
|
| Q |
213 |
aagttgactctatgtgtttca |
233 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46441858 |
aagttgactctatgtgtttca |
46441878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 303 - 392
Target Start/End: Original strand, 46441948 - 46442037
Alignment:
| Q |
303 |
cctatcgaaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46441948 |
cctatcgaaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttg |
46442037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 392
Target Start/End: Complemental strand, 18329767 - 18329685
Alignment:
| Q |
310 |
aaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||| |||| |||| |||||||| ||||||||||||||| |
|
|
| T |
18329767 |
aaacaggaaatttggaaatatcattgacaacctgataatgcaagaagtgaatccaccaaagcaatcattgtatgctcgtcttg |
18329685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 18331057 - 18330957
Alignment:
| Q |
18 |
agctagttgatgatagaaccatctttatgacattttccaaagattgtccggtttatgagaatgaacttagagaattttttacgaggtaccattttagatt |
117 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||| |||| | ||| ||| |||||||||| |||||||||| || || ||||| |||||| |||| |
|
|
| T |
18331057 |
agctagttgatgataggaccctcttcatgacattttctaaaggctatcctatttctgagaatgaaattagagaattcttcacaaggtatcatttttgatt |
18330958 |
T |
|
| Q |
118 |
t |
118 |
Q |
| |
|
| |
|
|
| T |
18330957 |
t |
18330957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University