View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_18 (Length: 377)
Name: NF19099_low_18
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 15161017 - 15161364
Alignment:
| Q |
12 |
atcatcaatcaagctaaagaagcagaaacaattcaaaataagcttgacattaaacaacttattggaagcaccttgtttatgcctctgaacaaactacatt |
111 |
Q |
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| T |
15161017 |
atcatcaatcaagctaaagaagcagaaacaatacaaaataagcttgacattaaacaacttatgggaagcaccatgtttatgcctctgaacaaactacatt |
15161116 |
T |
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| Q |
112 |
gtcaaaaagtaaattgcaaatattttgttgtatataagaataagaccatacaattccatcctcctatacttcaggaacaatcttcccagcgccagtatgt |
211 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
15161117 |
gtcaaaaagtaaattgcaaatattt-gttgtatata-gaataagaccatacaattccatcctcctagacttcaggaacaatcttcccagcaccagtatgt |
15161214 |
T |
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| Q |
212 |
atgcggtgaaactgcacctagtcaacatatcatattagtaacaaactactagttaacaaaatctataaaaagcaaaaagacaatcaataccacttgaatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15161215 |
atgcggtgaaactgcacctagtcaacatatcatattagtaacaaactactagttaacaaaatctataaaaaccaaaaagacaatcaataccacttgaatt |
15161314 |
T |
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| Q |
312 |
ccacatcaatacaaaaaggagaacctatagtttctgaatcaaatagatag |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15161315 |
ccacatcaatacaaaaaggagaacctatagtttctgaatcaaatagatag |
15161364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 40250097 - 40250209
Alignment:
| Q |
112 |
gtcaaaaagtaaattgcaaatattttgttgtatataagaataagaccatacaattccatcctcctatacttcaggaacaatcttcccagcgccagtatgt |
211 |
Q |
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| T |
40250097 |
gtcaaaaagtaaattgcaaatattt-gctgcatataagaataagaacatacatttccatcccccaagacttcaggaacaatcttcccagcaccagtgtgt |
40250195 |
T |
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| Q |
212 |
atgcggtgaaactgca |
227 |
Q |
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| T |
40250196 |
at--ggtgaaactgca |
40250209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 32266252 - 32266289
Alignment:
| Q |
12 |
atcatcaatcaagctaaagaagcagaaacaattcaaaa |
49 |
Q |
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||||||||||||||||||||| |||||||||| ||||| |
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| T |
32266252 |
atcatcaatcaagctaaagaaccagaaacaatacaaaa |
32266289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 37727630 - 37727675
Alignment:
| Q |
303 |
acttgaattccacatcaatacaaaaaggagaacctatagtttctga |
348 |
Q |
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| T |
37727630 |
acttgaattccacgtcaatacaaaaaggaaagcccatagtttctga |
37727675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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