View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_19 (Length: 356)
Name: NF19099_low_19
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 31688984 - 31688644
Alignment:
| Q |
1 |
agatatttttattgtatcattgtcgaagtactcatctctagccaaatctattcaatttcatagacgataacgacgatttgctattgacttaattttt-gt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31688984 |
agatatttttattgtatcattgtcgaagtactcatctctagccaaatctattcaatttcatagacgataacgacgatttgctattgacttaattttttgt |
31688885 |
T |
|
| Q |
100 |
aagagactttcagtttcaagttataagagaacaattgtaacttttgtgattttacatttcttaaatcctttattttacacgtaaaaaatagtccnnnnnn |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31688884 |
aagagactttcagtttcaagttataagagaacaattgtaacttttatgattttacatttcttaaatcctttattttacacgtaaaaaatagtcctttttt |
31688785 |
T |
|
| Q |
200 |
nncctttacttttccattaaccttatccattttatatctactattcatcttcaatattgtctccaaatttttaacagggatgtagcagttaaaataaatt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31688784 |
ttcctttacttttccattaaccttatccattttatatctactattcatcttcaatattgtctccaaatttttaagagggatgtagcagttaaaataaatt |
31688685 |
T |
|
| Q |
300 |
gaaatagataaatcaataagcaaaaaatagtagttgaaaagt |
341 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31688684 |
gaaatagataaatcaataagc-aaaaatagtagttgaaaagt |
31688644 |
T |
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