View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19099_low_21 (Length: 340)
Name: NF19099_low_21
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 48044145 - 48044452
Alignment:
| Q |
24 |
gcagattgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagaggg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48044145 |
gcagattgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagaggg |
48044244 |
T |
|
| Q |
124 |
agataggtcacgctaatttgatttgaataattctccgagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgtttctc |
223 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48044245 |
agataggtcacgcttatttgatttgaataattctcagagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgtttctc |
48044344 |
T |
|
| Q |
224 |
caacctttcctgttcgacaaacatttgaccccttgtgagaatgcagttgatcaattaggttgtgtcatgtgtgagacccaagcttaagatgctttcactc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48044345 |
caacctttcctgttcgacaaacatttgaccccttgtgagaatgcagttgatcaattaggttgtgtcatgtgtgagacccaagcttaagatgctttcactc |
48044444 |
T |
|
| Q |
324 |
ctctgtgc |
331 |
Q |
| |
|
|||||||| |
|
|
| T |
48044445 |
ctctgtgc |
48044452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 48051840 - 48051958
Alignment:
| Q |
24 |
gcagattgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagaggg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
48051840 |
gcagattgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcatatagaggg |
48051939 |
T |
|
| Q |
124 |
agataggtcacgctaattt |
142 |
Q |
| |
|
|||||| ||| |||||||| |
|
|
| T |
48051940 |
agatagatcatgctaattt |
48051958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University