View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_23 (Length: 326)
Name: NF19099_low_23
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 5394858 - 5394722
Alignment:
| Q |
172 |
cattatctaaacctaaaagtttatattgtgttttaaaattcnnnnnnngagaggattttttaaaattcttatttacccatgttgttacatttgaattaat |
271 |
Q |
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| T |
5394858 |
cattatctaaacctaaaagtttatattgtgttttaaaattctttttttgagaggatgttttaaaattcttatttacccatgttgttacatttgaattaat |
5394759 |
T |
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| Q |
272 |
gcaataaatagaatataccttacccaaagatcaacgt |
308 |
Q |
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| T |
5394758 |
tcaataattagaatataccttacccaaagatcaacgt |
5394722 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 5395017 - 5394973
Alignment:
| Q |
11 |
agaatattcaagcttcatgctgtagaatattagtctttatatgtt |
55 |
Q |
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| T |
5395017 |
agaatattcaagcttcatgctgtagaatattagtctttatatgtt |
5394973 |
T |
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