View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_24 (Length: 295)
Name: NF19099_low_24
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 102 - 288
Target Start/End: Complemental strand, 129097 - 128911
Alignment:
| Q |
102 |
cttaaagttaagaaacgcgtaacctctatttattcccgatcgtttccctctgctgcacatgaattggaaaataacaattacgattttctccaattgattt |
201 |
Q |
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| T |
129097 |
cttaaagttaagaaacgcgtaacctctatttattcccgatcgtttccctctgctgcacatgaattggaaaataaaaattacgattttctccaattgattt |
128998 |
T |
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| Q |
202 |
gcttcccaatgttccttcaatcattttggttcccaatattatgttttgtgcaattgattttctgcacatcaactatgatattcttcg |
288 |
Q |
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| T |
128997 |
gcttcccaatgttccttcaatcattttggttcccaatattatgttttgtgcaattgattttctgcacatcaactatgattttcttcg |
128911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 129148 - 129103
Alignment:
| Q |
1 |
ccctttgttatttttatctttagtttttgatgggctagcaacatga |
46 |
Q |
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| T |
129148 |
ccctttgttatttttatctttagtttttgatgggctagcaacatga |
129103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8547484 - 8547439
Alignment:
| Q |
1 |
ccctttgttatttttatctttagtttttgatgggctagcaacatga |
46 |
Q |
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| T |
8547484 |
ccctttgttatttttatacttagtttttggtgggttagcaacatga |
8547439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 3044764 - 3044712
Alignment:
| Q |
234 |
ccaatattatgttttgtgcaattgattttctgcacatcaactatgatattctt |
286 |
Q |
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| T |
3044764 |
ccaatgttatgttttgtgcaattgattttttgcacatcaactatgattttctt |
3044712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 39594702 - 39594746
Alignment:
| Q |
2 |
cctttgttatttttatctttagtttttgatgggctagcaacatga |
46 |
Q |
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| T |
39594702 |
cctttgtaatttttatccttagtttttgatgggttagcaacatga |
39594746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24429756 - 24429797
Alignment:
| Q |
1 |
ccctttgttatttttatctttagtttttgatgggctagcaac |
42 |
Q |
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| T |
24429756 |
ccctttgttatttttatccttagtttttggtgggttagcaac |
24429797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41482469 - 41482428
Alignment:
| Q |
1 |
ccctttgttatttttatctttagtttttgatgggctagcaac |
42 |
Q |
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| T |
41482469 |
ccctttgttatttttatccttagtttttggtgggttagcaac |
41482428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 42471783 - 42471746
Alignment:
| Q |
152 |
tgctgcacatgaattggaaaataacaattacgattttc |
189 |
Q |
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| T |
42471783 |
tgctgcacatgaattggaaaataccatttacgattttc |
42471746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 45413818 - 45413778
Alignment:
| Q |
2 |
cctttgttatttttatctttagtttttgatgggctagcaac |
42 |
Q |
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| T |
45413818 |
cctttgttatttttatccttagtttttggtgggttagcaac |
45413778 |
T |
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