View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_25 (Length: 294)
Name: NF19099_low_25
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29582225 - 29582501
Alignment:
| Q |
1 |
aagatctgtcagttaaaggaaattcaaaaagttcagcaataaacttcactcttaaaatcctctcaacagcatcatcaatcctggatattggtacttcccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29582225 |
aagatctgtcagttaaaggaaattcaaaaagttcagcaataaacttcactcttaaaatcctctcaacagcatcatcaatcctggatattggtacttccc- |
29582323 |
T |
|
| Q |
101 |
tgattgaactaaagacatcaactcttccatgaatttttcatatcttaaaggaaccatcacctgcacacatgttcataaatatataaatttaaaatgaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29582324 |
tgattgaactaaagacatcaactcttccatgaatttttcatatcttataggaaccatcacctgcacacatgttcataaatatataaatttaaaatgaaat |
29582423 |
T |
|
| Q |
201 |
caagcaatctatgagaaaacattattggatttgaagttttctaccatgtcgattccagcattaatggcagtggaaatg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29582424 |
caagcaatctatgagaaaacattattggatttgaagttttctaccatgtcgattccagcattaatggaagtggaaatg |
29582501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 29611994 - 29611723
Alignment:
| Q |
1 |
aagatctgtcagttaaaggaaattcaaaaagttcagcaataaacttcactcttaaaatcctctcaacagcatcatcaatcctggatattggtacttcccc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||||||||||| |
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| T |
29611994 |
aagatctgtcagttaaaggaaattcaaaaagttcagcaataaacttcactcttaaaatccgctcgacagcatcatcaattctggtcattggtacttcccc |
29611895 |
T |
|
| Q |
101 |
tgattgaactaaagacatcaactcttccatgaatttttcatatcttaaaggaaccatcacctgcacacatgttcataaatatataaatttaaaatgaaat |
200 |
Q |
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|||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||| || |||| || ||||||| |||||||||||||||| |
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| T |
29611894 |
cgattgaactagagacgttaactcttccatgaattgttcatatcttaaaggaaccatcacctg--catatgtacacaaatatacaaatttaaaatgaaat |
29611797 |
T |
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| Q |
201 |
caagcaatctatgagaaaacattattggatttgaagttttctaccatgtcgattccagcattaatggcagtgga |
274 |
Q |
| |
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||||||||||||| |||| |||| || ||||| | | ||||||||| |||||||||||||| | |||||| |
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| T |
29611796 |
caagcaatctatgttaaaatattacagggactgaagatctgtaccatgtcaattccagcattaattgaagtgga |
29611723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 25127640 - 25127773
Alignment:
| Q |
1 |
aagatctgtcagttaaaggaaattcaaaaagttcagcaataaacttcactcttaaaatcctctcaacagcatcatcaatcctggatattggtacttcccc |
100 |
Q |
| |
|
||||||||||| |||| ||||||||||| || ||||| |||||| ||||| ||||| | ||||||||||||||| || ||| ||||| ||||| || |
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| T |
25127640 |
aagatctgtcacttaatggaaattcaaatagaccagcagcaaactttactctcaaaattcgctcaacagcatcatcgattctgctcattggcacttcacc |
25127739 |
T |
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| Q |
101 |
tgattgaactaaagacatcaactcttccatgaat |
134 |
Q |
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||||| || |||||| |||| ||||| |||||| |
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| T |
25127740 |
tgattcaattaaagaggtcaattcttcgatgaat |
25127773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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