View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_30 (Length: 277)
Name: NF19099_low_30
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 12062186 - 12062323
Alignment:
| Q |
126 |
aggatttctataatattgattttgataagaaaatggatttataaaaaagctaatgaacaagacgagggtaccccgtaaaggaaaaaagacaaagatacaa |
225 |
Q |
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| T |
12062186 |
aggatttctataatattgatttt-ataagaaaatggatttataaaaaagctaatgaacaagacgagggtaccccgtaatggaaaaaagacgaagatacaa |
12062284 |
T |
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| Q |
226 |
aacgaacttgggaagacattacaaaatggaggaggattc |
264 |
Q |
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| T |
12062285 |
aacaaacttgggaagacattacaaaatggaggaggattc |
12062323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 12061983 - 12062083
Alignment:
| Q |
18 |
aaatgtatctttgttgacgttgatggagattttattgaagtactcataattatattgaatgtgagcacttgacattgcatgagagcaaaatctattccaa |
117 |
Q |
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| T |
12061983 |
aaatgtatctttgttgacgttgatggagattttattgaagtactcataattatattgaatgtgagcacttgacattgcatgagagcaaaatctattccaa |
12062082 |
T |
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| Q |
118 |
a |
118 |
Q |
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| T |
12062083 |
a |
12062083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 12077032 - 12077129
Alignment:
| Q |
126 |
aggatttctataatattgattttgataagaaaatggatttataaaaaagctaatgaacaagacgagggtaccccgtaaaggaaaaaagacaaagatac |
223 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
12077032 |
aggatttctataacattgaatttgataagaaaatggatttataaaaaagctaatgaacaagacaagggtaccccgtaatggaaaaaagacaaagatac |
12077129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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