View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_34 (Length: 264)
Name: NF19099_low_34
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 39076030 - 39076283
Alignment:
| Q |
5 |
gagtgagaagaatgaggaaacaatgggaggaacatactttggttgaaggatgtcggcaatggcagtgtgttcagctttggcgtgtacaaacaatgcacca |
104 |
Q |
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| T |
39076030 |
gagtaagaataatgaggaaacaatgggaggaacatactttggctgaaggatgtcggcaatggcagtgtgttcagctttggcgtgtacaaacaatgcacca |
39076129 |
T |
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| Q |
105 |
gcgttgttgcaaatgatggaacatgaggcgttgttaggttcgtcgtgttgtgttattacaagacgaccagcgagtggtggaaagaagttgagagtggagg |
204 |
Q |
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| T |
39076130 |
gcgttgttgcaaatgatggaacatgaggcgttgttaggttcgtcgtgttgtgttattacaagacgaccagcgagtggtggaaagaagttgagagtggagg |
39076229 |
T |
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| Q |
205 |
aaagtgtttgtttaagatggtcgatttggtttgcattgggtttatggaaaagaa |
258 |
Q |
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| T |
39076230 |
aaagtgtttgtttaagatggtcgatttggtttgtattgggtttatggaaaagaa |
39076283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 7399280 - 7399514
Alignment:
| Q |
24 |
acaatgggaggaacatactttggttgaaggatgtcggcaatggcagtgtgttcagctttggcgtgtacaaacaatgcaccagcgttgttgcaaatgatgg |
123 |
Q |
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| T |
7399280 |
acaacgggaggaacatactttggttgaaggatgtcggcaatggtagtgttttctgctttggcatggacaaacaatgcaccaacgttgttacaaacgatgg |
7399379 |
T |
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| Q |
124 |
aacatgaggcgttgttaggttcgtcgtgttgtgttattacaagacgaccagcgagtggtggaaagaagttgagagtggaggaaagtgtttgtttaagatg |
223 |
Q |
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| T |
7399380 |
aacatgaggcgttgttaggttcgtcgtgttgtgttattacaagacgacccgcgagtggtggaaaaaagttaagtgtggaggaaagtgtttttttaagatg |
7399479 |
T |
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| Q |
224 |
gtcgatttggtttgcattgggtttatggaaaagaa |
258 |
Q |
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| T |
7399480 |
gtcaatttggtttgttttgggtttatggaaaagaa |
7399514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 34174927 - 34175162
Alignment:
| Q |
23 |
aacaatgggaggaacatactttggttgaaggatgtcggcaatggcagtgtgttcagctttggcgtgtacaaacaatgcaccagcgttgttgcaaatgatg |
122 |
Q |
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| T |
34174927 |
aacaatgggaggaacatagttgggtcgaaggatgtgagcaatggttgtgttttctgctatggcatggacaaacaacgcaccagcattgttgcaaatgatg |
34175026 |
T |
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| Q |
123 |
gaacatgaggcgttgttaggttcgtcgtgttgtgttattacaagacgaccagcgagtggtggaaagaagttgagagtggaggaaagtgtttgtttaagat |
222 |
Q |
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| T |
34175027 |
gaacatgaggcattgttatgttcatcgtgttgagatattacaagacgaccaacgaggggtggaaagaaatggagagtggaggaaagtgtttgtttaagat |
34175126 |
T |
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| Q |
223 |
ggtcgatttggtttgcattgggtttatggaaaagaa |
258 |
Q |
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| T |
34175127 |
gttggatttggttggttttaggtttatggaaaagaa |
34175162 |
T |
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