View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19099_low_36 (Length: 259)
Name: NF19099_low_36
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 39417009 - 39416779
Alignment:
| Q |
13 |
aatatatgaaatgatcacaacattggtgaaagtaaattgattgaatctcatttaatctcacacccacccctaatagagaatgacaaaactggggctggg- |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39417009 |
aatatatgaaatgatcacaacattggtgaaagtaaattgattgaatctcatttaatctcacacccacccctaatagagaatgacaaaactggggctgggg |
39416910 |
T |
|
| Q |
112 |
tagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaacaaactaacaatttccat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39416909 |
tagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaacaaactaacaatttccat |
39416810 |
T |
|
| Q |
212 |
tcaaagataaaaaataaaagaatcagaaaat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39416809 |
tcaaagataaaaaataaaagaatcagaaaat |
39416779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 399639 - 399687
Alignment:
| Q |
177 |
agtaaatattaatctaacaaactaacaatttccattcaaagataaaaaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| | |||||| |
|
|
| T |
399639 |
agtaaatattaatctaacaaactaacattttccattaaaaaaaaaaaaa |
399687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 33872904 - 33872805
Alignment:
| Q |
103 |
ggggctgggtagctcaactggtttgaaccga-gggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaacaaactaa |
201 |
Q |
| |
|
|||| |||||| |||||||||||||| | | |||| |||||||| ||||| | ||| ||||||| |||| || | ||||||||||||||||||||||| |
|
|
| T |
33872904 |
ggggttgggtaactcaactggtttgagctaaagggaaaaggagttggaggttttgggttcaaacc-gaacaaaggactaaatattaatctaacaaactaa |
33872806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 30979824 - 30979912
Alignment:
| Q |
108 |
tgggtagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaacaa |
196 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||| ||||||| ||| ||||||||| ||||| || ||| | ||||||||||| |
|
|
| T |
30979824 |
tgggtagctcaactggtttgagctaagggataaggagttggaggtcttgggctcaaacccggacgaaggagaaaaaactaatctaacaa |
30979912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 38020376 - 38020462
Alignment:
| Q |
110 |
ggtagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaacaa |
196 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||| |||||| || ||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
38020376 |
ggtagctcaactggtttgagctaagggttaaggagttggaggtccaaggttcaaacccggacgaaggagtaaatattaatctaacaa |
38020462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 5251941 - 5251896
Alignment:
| Q |
108 |
tgggtagctcaactggtttgaaccgagggacaaggagttcgaggtc |
153 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||| |||||| |
|
|
| T |
5251941 |
tgggtagctcaactggtttgagccaagggaaaaggagttggaggtc |
5251896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 2097085 - 2097173
Alignment:
| Q |
108 |
tgggtagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaacaa |
196 |
Q |
| |
|
|||||||||||||| |||||| | |||| |||||||| |||||| ||| ||||||||| || | |||||||||||||||||||| |
|
|
| T |
2097085 |
tgggtagctcaactagtttgagctaagggttaaggagttggaggtcctgggttcaaacccggacaagggagtaaatattaatctaacaa |
2097173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 26009786 - 26009857
Alignment:
| Q |
103 |
ggggctgggtagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaa |
174 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||| || ||||| |||||| ||| ||||||||| ||||| |
|
|
| T |
26009786 |
ggggttgggtagctcaactggtttgagccaagggataaagagttggaggtcctgggttcaaacccggacgaa |
26009857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 32423624 - 32423541
Alignment:
| Q |
110 |
ggtagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaa |
193 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||| |||| ||| ||| ||| ||||||||| || || ||||||||||||||||| |
|
|
| T |
32423624 |
ggtagctcagctggtttgaactaagggataagaagttggagttcttgggttcaaacccggacaaaggagtaaatattaatctaa |
32423541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 44752038 - 44751953
Alignment:
| Q |
109 |
gggtagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaac |
194 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| ||| ||||| ||| ||||||||| || || |||||||||||||||||| |
|
|
| T |
44752038 |
gggtagctcaactggtttgagctaagggataaggggttggaggttctgggttcaaacccggacaaatgagtaaatattaatctaac |
44751953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 45443489 - 45443448
Alignment:
| Q |
160 |
tcaaacccgaacgaacaagtaaatattaatctaacaaactaa |
201 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
45443489 |
tcaaacccggacgaaggagtaaatattaatctaacaaactaa |
45443448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 42529436 - 42529524
Alignment:
| Q |
108 |
tgggtagctcaactggtttgaaccgagggacaaggagttcgaggtctcgggatcaaacccgaacgaacaagtaaatattaatctaacaa |
196 |
Q |
| |
|
||||||||||| ||||||||| | ||||| |||||||| |||||| | | |||||| |||||| |||||||||||||||||||| |
|
|
| T |
42529436 |
tgggtagctcagctggtttgagctaagggataaggagttggaggtcatgagttcaaacttaaacgaaagagtaaatattaatctaacaa |
42529524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University