View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_38 (Length: 249)
Name: NF19099_low_38
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_38 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 27440272 - 27440355
Alignment:
| Q |
166 |
agaaatctgggattggggtatgtggatctctatttgattcactggccagtaaggttgaaacaagacattgaaggccataacttt |
249 |
Q |
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| T |
27440272 |
agaaatctgggattggggtatgtggatctctatttgattcactggccagtaaggttgaaacaagacgttgaaggccataacttt |
27440355 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 27440123 - 27440192
Alignment:
| Q |
17 |
actgatgctcaccatgaccttgttctcccagctctcaaatccactctcaagcaagcataattctcttaac |
86 |
Q |
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| T |
27440123 |
actgatgctcaccatgaccttgttctcccagctctcaaatccactctcaagcaagcataattctcttaac |
27440192 |
T |
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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 27428740 - 27428804
Alignment:
| Q |
166 |
agaaatctgggattggggtatgtggatctctatttgattcactggccagtaaggttgaaacaaga |
230 |
Q |
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| T |
27428740 |
agaaatctgggattggagtatgttgatctctatttgattcactggccagtaaggttgaaacaaga |
27428804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 27428589 - 27428658
Alignment:
| Q |
17 |
actgatgctcaccatgaccttgttctcccagctctcaaatccactctcaagcaagcataattctcttaac |
86 |
Q |
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| T |
27428589 |
actgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaagcaagcataattttcttaac |
27428658 |
T |
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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 27443049 - 27443118
Alignment:
| Q |
17 |
actgatgctcaccatgaccttgttctcccagctctcaaatccactctcaagcaagcataattctcttaac |
86 |
Q |
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| T |
27443049 |
actgatgctcaccatgaccttgttctcccatctctcaaaactaccatcaagcaagcatatttctcttaac |
27443118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 27443211 - 27443273
Alignment:
| Q |
184 |
tatgtggatctctatttgattcactggccagtaaggttgaaacaagacattgaaggccataac |
246 |
Q |
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| T |
27443211 |
tatgtggatctctatttgattcactttccagtgaggttgaaacaagatgttgaaggctataac |
27443273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 26933497 - 26933439
Alignment:
| Q |
16 |
cactgatgctcaccatgaccttgttctcccagctctcaaatccactctcaagcaagcat |
74 |
Q |
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| T |
26933497 |
cactgatgctcaccatgaccttgttctcaaagctctcaaaaccaccctcaagcaagcat |
26933439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 26933358 - 26933287
Alignment:
| Q |
169 |
aatctgggattggggtatgtggatctctatttgattcactggccagtaaggttgaaacaagacattgaaggc |
240 |
Q |
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| T |
26933358 |
aatctgaggttggagtatgtagatctctacttgattcactggccagttagattgaaagaagatgttgaaggc |
26933287 |
T |
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