View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19099_low_47 (Length: 206)
Name: NF19099_low_47
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 48869737 - 48869579
Alignment:
| Q |
19 |
atgtttaaccgtgctatgaagtttttcgatactaaactgtgtttcttattttagttgttattttgcttgcagatgctataccaaaaaagattcttgaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48869737 |
atgtttaaccgtgctatgaagtttttcgatactaaactgtgtttcttattttagttgttattttgcttgcagatgctataccaaaaaagattcttgaatt |
48869638 |
T |
|
| Q |
119 |
gatgaatgttgaaaatcttacaagggataatgtggccagccatctccaggtgtttttct |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48869637 |
gatgaatgttgaaaatcttacaagggataatgtggccagccatctccaggtgtttttct |
48869579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 2893933 - 2894032
Alignment:
| Q |
70 |
tagttgttattttgcttgcagatgctataccaaaaaagattcttgaattgatgaatgttgaaaatcttacaagggataatgtggccagccatctccaggt |
169 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
2893933 |
tagttgttatcttgcttgcagaggctgtacccaaaaagattcttgaactgatgaatgttgaaaatctgacaagggaaaaggtggccagccatctccaggt |
2894032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 2905397 - 2905500
Alignment:
| Q |
74 |
tgttattttgcttgcagatgctataccaaaaaagattcttgaattgatgaatgttgaaaatcttacaagggataatgtggccagccatctccaggtgttt |
173 |
Q |
| |
|
||||||||||| |||||| ||| | ||||||||||| ||||| |||||| ||| ||||| ||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
2905397 |
tgttattttgcatgcagaggctgtgccaaaaaagatacttgacttgatggatgatgaaacccttacaagggagaatgtggccagccatctccaggtattt |
2905496 |
T |
|
| Q |
174 |
ttct |
177 |
Q |
| |
|
|||| |
|
|
| T |
2905497 |
ttct |
2905500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 2889333 - 2889471
Alignment:
| Q |
30 |
tgctatgaagtttttcgatactaaactgtgtttcttattttagttgttattttgcttgcagatgctataccaaaaaagattcttgaattgatgaatgttg |
129 |
Q |
| |
|
||||||||| |||| |||| || || ||| ||||| || |||||||||| || ||||| || ||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
2889333 |
tgctatgaatttttgcgattctgaagtgtttttctcatgatagttgttatcttacttgc-gaggctgtaccgaaaaagattcttgaactgatgaatgttg |
2889431 |
T |
|
| Q |
130 |
aaaatcttacaagggataatgtggccagccatctccaggt |
169 |
Q |
| |
|
||||||| |||||||| || || ||||||||| ||||||| |
|
|
| T |
2889432 |
aaaatctgacaagggagaaagttgccagccatatccaggt |
2889471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 49060410 - 49060301
Alignment:
| Q |
74 |
tgttattttgcttgcagatgctataccaaaaaagattcttgaattgatgaatgttgaaaatcttacaagggataatgtggccagccatctccaggtgttt |
173 |
Q |
| |
|
|||| |||| |||||||| ||| |||| ||||| |||||||| |||||||||| |||||| |||||||||| || ||||| |||||||||||||| ||| |
|
|
| T |
49060410 |
tgttgttttacttgcagaggctgtacccaaaaaaattcttgatatgatgaatgtcgaaaatattacaagggagaacgtggcaagccatctccaggtattt |
49060311 |
T |
|
| Q |
174 |
ttctatttct |
183 |
Q |
| |
|
||||| |||| |
|
|
| T |
49060310 |
ttctagttct |
49060301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 47280538 - 47280444
Alignment:
| Q |
74 |
tgttattttgcttgcagatgctataccaaaaaagattcttgaattgatgaatgttgaaaatcttacaagggataatgtggccagccatctccagg |
168 |
Q |
| |
|
|||| |||| || ||||| ||| |||| ||||||||| |||| |||||||||||||||||| |||||||||| | ||||| | ||||||||||| |
|
|
| T |
47280538 |
tgttgttttactggcagaggctgtacccaaaaagatttttgatttgatgaatgttgaaaatattacaagggaagacgtggcaacccatctccagg |
47280444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 47274756 - 47274665
Alignment:
| Q |
74 |
tgttattttgcttgcagatgctataccaaaaaagattcttgaattgatgaatgttgaaaatcttacaagggataatgtggccagccatctcc |
165 |
Q |
| |
|
|||| |||| || ||||| ||| |||| |||||||||||| |||||||||||||||||| |||||||||| | ||||| |||||||||| |
|
|
| T |
47274756 |
tgttgttttactggcagaggctgtacctgaaaagattcttggtttgatgaatgttgaaaatattacaagggaggacgtggcgagccatctcc |
47274665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 18719639 - 18719704
Alignment:
| Q |
102 |
aaaaagattcttgaattgatgaatgttgaaaatcttacaagggataatgtggccagccatctccag |
167 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||| |||| || |||||||||||||||||| |
|
|
| T |
18719639 |
aaaaagattcttgaactgatgaatgttgaaaatctgacatgggagaaggtggccagccatctccag |
18719704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University