View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_5 (Length: 567)
Name: NF19099_low_5
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 264 - 525
Target Start/End: Complemental strand, 30652524 - 30652265
Alignment:
| Q |
264 |
cctcatcaaagagctaagtacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacag |
363 |
Q |
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| T |
30652524 |
cctcatcaaagagctaagcacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacag |
30652425 |
T |
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| Q |
364 |
ccacaggtactcttccagctactctccacnnnnnnnnatgcacatatatatattctttgaaacactgaacatgacactgacacgtaaacacgagtaataa |
463 |
Q |
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| T |
30652424 |
ccacaggtactcttctagctactcttcacttttttttatgcac--atatatattctttgaaacagtgaaaatgacactgacacgtaaacactactgataa |
30652327 |
T |
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| Q |
464 |
cagtttgaaaaacataagtgatttaataagattgtttttgaattaggcatcgtttcatctta |
525 |
Q |
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| T |
30652326 |
cagtttgaaaaacataagtgatttaataagattgtttttgaatcaggcatcgtttcatctta |
30652265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 30652779 - 30652586
Alignment:
| Q |
13 |
aatatctcaacaaaaagagtagatctgtgttgtgagttgtgattaaacaaaaggatatgaaacgtgatggagaaattttagaagtggtgctgggtggaaa |
112 |
Q |
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| T |
30652779 |
aatatctcaacaaaaagagtagagctgtgttgtgaggtgtgattaaacaaaaggatatgaaacgtgatggagaaattttagaagtggtgctgggtggaaa |
30652680 |
T |
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| Q |
113 |
acaatcaaagggctcctagtctctttagcaaaacggttatcaaacacataatgcacaaaatggctaaaaagaaggaaacaaatgacaaccacgt |
206 |
Q |
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| T |
30652679 |
acaatcaaagggcttctagtctctttagcaaaacggttatcaaacacataatgcacaaaatggctaaaaagaaggaaacaaatgacaaccacgt |
30652586 |
T |
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