View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19099_low_9 (Length: 502)
Name: NF19099_low_9
Description: NF19099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19099_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 35127925 - 35128400
Alignment:
| Q |
18 |
caacgatgtcatccagtacaatggttctgagaaagacagcactgattatttctctgaggaggaaccttcaccacataagcttgatgatgagaagccgatg |
117 |
Q |
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| T |
35127925 |
caacgatgtcatccagtacaatggttctgagaaagacagcactgattatttctctgaggaggaaccttcaccacataagcttgatgatgagaagccgatg |
35128024 |
T |
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| Q |
118 |
agtggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggtgtcacaaatgttgttttagaggaatgtgaggatg |
217 |
Q |
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| T |
35128025 |
agtggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggtgtcacaaatgttgttttagaggaatgtggagatg |
35128124 |
T |
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| Q |
218 |
aggtcgaagagggtgatatagaggaggaagcaatgcataaagaaacaaaagggctattagaaaaaattagagatgagggtagaaatgatatgagaggaga |
317 |
Q |
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| T |
35128125 |
aggtggaagagggtgatatagaggaggaagcaatgcataaagaaacaaaagggctattagaaaaaattagagatgagggtagaaatgatatgagaggaga |
35128224 |
T |
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| Q |
318 |
atatgcaaaaggagtttccagtggaacaagtgaaagccatcaagatattggttcagttgttgaaaatgtggaagcagaacaggaagacaaacatgatttg |
417 |
Q |
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| T |
35128225 |
atatgcaaaaggagtttccagtggaacaagtgaaagccatcaagatattggttcagttgttgaaaatgtggaagcagaacaggaagacaaacatgatttg |
35128324 |
T |
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| Q |
418 |
tggactgaaggagaaatgaggagtcaagaagattcaaaagtatgcaaggatacagttcaatcaagaaatgatgatg |
493 |
Q |
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| T |
35128325 |
tggactgaaggagaaatgaggagtcaagaagattcaaaagtatgcgaggatacagttcaatcaagaaatgatgatg |
35128400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 378 - 493
Target Start/End: Original strand, 35128636 - 35128751
Alignment:
| Q |
378 |
tgaaaatgtggaagcagaacaggaagacaaacatgatttgtggactgaaggagaaatgaggagtcaagaagattcaaaagtatgcaaggatacagttcaa |
477 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||| |||| |
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| T |
35128636 |
tgaaaatgtggaagcaggacaggaagacaaacatgatttgtggactgaaggagaaatgagaaatcaagaagattcaaaagtatgcgaggagacagctcaa |
35128735 |
T |
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| Q |
478 |
tcaagaaatgatgatg |
493 |
Q |
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| T |
35128736 |
tcaagaaatgatgatg |
35128751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 256 - 476
Target Start/End: Complemental strand, 26779045 - 26778813
Alignment:
| Q |
256 |
aaagaaacaaaagggctattagaaa------aaattagagatgagggtagaaatgatatgagaggagaatatgcaaaaggagtttccagtggaaca---- |
345 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||| |||||||||| || | ||||||||| |
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| T |
26779045 |
aaagaaacaaaagggctattagaaagaaaaaaaatcagagatgagggtaggactgatatgagaggagaagatgcaaaagggattcctagtggaacagtga |
26778946 |
T |
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| Q |
346 |
-agtgaa-agccatcaagatattggttcagttgttgaaaatgtggaagcagaacaggaagacaaacatgatttgtggactgaaggagaaatgaggagtca |
443 |
Q |
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| T |
26778945 |
gagtgatcatgaatcatgatattggtccagttgttgaaaatatgcaagtagcactggaagacaaactgggtttggggattgatggagaaatgaggaatca |
26778846 |
T |
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| Q |
444 |
agaagattcaaaagtatgcaaggatacagttca |
476 |
Q |
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| T |
26778845 |
aacagattcaagagtatgctaggagacggttca |
26778813 |
T |
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