View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1909_high_2 (Length: 378)

Name: NF1909_high_2
Description: NF1909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1909_high_2
NF1909_high_2
[»] scaffold0147 (1 HSPs)
scaffold0147 (11-362)||(19579-19929)


Alignment Details
Target: scaffold0147 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 19579 - 19929
Alignment:
Q  11 cacagaccaatattaatatttcaatgttgaacaagtaaaagccccaatactgaaggctcatcattatatatcctcctggcaaaaaagagtaaatgtagaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  19579 cacagaccaatattaatatttcaatgttgaacaagtaaaagcaccaatactgaaggttcatcattatatatcctcctggcaaaa-agagtaaatgtagaa 19677  T
Q  111 accatgatcaaacggaaatatcaagtgtctataaaatcttgagcacaatcttcttgttctaaatgaagacgcgcgcaaattcaactatttatgactattg 210  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19678 accatgatcaaatggaaatatcaagcgtctataaaatcttgagcacaatcttcttgttctaaatgaagacgcgcgcaaattcaactatttatgactattg 19777  T
Q  211 acaaagtcaagcatgcatagttgtatcacaaatatccccagttaaaatgaagagaaggcattaagtcattttcaatattaaggttcagcgtgcttgtacc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19778 acaaagtcaagcatgcatagttgtatcacaaatatccccagttaaaatgaagagaaggcattaagtcattttcaatattaaggttcagcgtgcttgtacc 19877  T
Q  311 aaaagaacaataatagatccgtagatccttagcccagtttaaaccaccttct 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19878 aaaagaacaataatagatccgtagatccttagcccagtttaaaccaccttct 19929  T

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