View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1909_high_4 (Length: 311)
Name: NF1909_high_4
Description: NF1909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1909_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 8527453 - 8527707
Alignment:
| Q |
12 |
atgaatgaaagaaactacattaattaaatcatatgaaaactcaaatcaagtaaaagcaacaaagctaaggaaggagagcaaaattggaatagtttgttaa |
111 |
Q |
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| T |
8527453 |
atgaatgaaagaaactacattaattaaatcatatgaaaactcaaatcaagtaaaagcaacaaagctaaggaaggagagcaaaattggaatagtttgttaa |
8527552 |
T |
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| Q |
112 |
ttttaatctagttttaatctcttcccacctacatgttcgttttcaggcta----atatcaaacaactgctcagcctcattattcgtcttattcttggagt |
207 |
Q |
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| T |
8527553 |
ttttaatctagttttaatctcttcccacctacatgttcgttttcaggctaatatatatcaaacaactgctcagcctcattattcgtcttattcttggagt |
8527652 |
T |
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| Q |
208 |
tgtatttcccaagcatgtcgacaatttcgaattaggaatatgaatggtgaaactc |
262 |
Q |
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| T |
8527653 |
tgtatttcccaagcatgtcgacaatttcgaattaggaatatgaatggtgaaactc |
8527707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 8627299 - 8627386
Alignment:
| Q |
35 |
ttaaatcatatgaaaactcaaatcaagtaaaagcaacaaagctaaggaaggagagcaaaattggaatagtttgttaattttaatctag |
122 |
Q |
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| T |
8627299 |
ttaaattatatgaaaactccaatcaagtaaaagcaacaaagctaaggaaagagagcataattggagtagttttttagtttcaatctag |
8627386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 8632505 - 8632569
Alignment:
| Q |
48 |
aaactcaaatcaagtaaaagcaacaaagctaaggaaggagagcaaaattggaatagtttgttaat |
112 |
Q |
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| T |
8632505 |
aaactcacatcaaataaaagcaacaaaggtaaagaaggaaagcataattggaatagtttgttaat |
8632569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 294
Target Start/End: Original strand, 8527724 - 8527755
Alignment:
| Q |
263 |
gaggcgaggttcttaaaattatagaacgtctt |
294 |
Q |
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| T |
8527724 |
gaggcgaggttcttaaaattatagaacgtctt |
8527755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 41439907 - 41439964
Alignment:
| Q |
34 |
attaaatcatatgaaaactcaaatcaagtaaaagcaacaaagctaaggaaggagagca |
91 |
Q |
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| T |
41439907 |
attagatcatatgaaaactcaaatcagataaaagcaacatagctaaggaatgagagca |
41439964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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