View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1909_high_6 (Length: 302)
Name: NF1909_high_6
Description: NF1909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1909_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 39 - 297
Target Start/End: Original strand, 23861435 - 23861694
Alignment:
| Q |
39 |
catctttctgtgaaagatataaaatcaaaagtcattcaatacaccagtgcatcaagatttacgataatattattgaaccaactctggttgatgaggggaa |
138 |
Q |
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| T |
23861435 |
catctttctgtgaaagatataaaatcaaaagtcattcaatacactagtgcatcaagatttacgataatattattgaaccaactctggttgatgaggggaa |
23861534 |
T |
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| Q |
139 |
gaacnnnnnnnnnn-caaccaaaacatgttgatataggtaagaacgagcgtgtgaaaaaagcttggcaacaaaagcttgtgaaggacaacaacttacata |
237 |
Q |
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| T |
23861535 |
gaacaaaaaaaaaaacaaccaaaacatgttgatataggtaagaacgagcgtgtgaaaaaagcttggcaacaaaagcttgtgaaggacaacaacttacata |
23861634 |
T |
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| Q |
238 |
ataatccccaattgattaaagaacctttagacactaaaaaggcaagtaattcatctcact |
297 |
Q |
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| T |
23861635 |
ataatccccaattgattaaagaacctttagacactaaaaaggcaagtaattcatttcact |
23861694 |
T |
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