View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1909_high_7 (Length: 263)
Name: NF1909_high_7
Description: NF1909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1909_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 7543169 - 7543415
Alignment:
| Q |
12 |
atgaattgttaattttgttgatcagatttgtagagaaatagacatttgtatannnnnnnnnnnnnnnacacacttatatagttttcataacctccagttt |
111 |
Q |
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| T |
7543169 |
atgaattgttaattttgttgatcagatttgtagagaaatagacatttgtatattttttagtttttttactcacttatatagttttcataacctccagttt |
7543268 |
T |
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| Q |
112 |
ttgtctattcattgatgtatattgatctaataatttatagtaaatgctctttgccaccactagtc----------nnnnnnnttattttgattatgacta |
201 |
Q |
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| T |
7543269 |
ttgtctattcattgatgtatattgatctaataatttatagtaaatgctctttgccaccaatagtcaaaaaaattattttgatttattttgattatgacta |
7543368 |
T |
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| Q |
202 |
aaatgatggttgattgtatggtaggaagcatcaacggccaagtatat |
248 |
Q |
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| T |
7543369 |
aaatgatggttgattgtatggtaggaagcatcaacggccaagtatat |
7543415 |
T |
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