View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1909_low_1 (Length: 533)
Name: NF1909_low_1
Description: NF1909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1909_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 25 - 512
Target Start/End: Original strand, 35725272 - 35725755
Alignment:
| Q |
25 |
tataaatcatcctaccctccattgtgattcttacttcttataggtggggtataaataagtaagattcgaaacgcaatgagacattacttattgtgatatg |
124 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725272 |
tataaaccatcctaccctccattgtgattcttacttcttataggtggggtataaataagtaagattcgaaacgcaatgagacattacttattgtgatatg |
35725371 |
T |
|
| Q |
125 |
atttaagagtcaaagcaatccaaatttaattaaagatcatagtcttctaaactctaaataaactctttttcaacctagcttcataattacaagtagactc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
35725372 |
atttaagagtcaaagcaatccaaatttaattaaagaacatagtcttctaaactctaaacaaactctttttcaacctagcttcataatta----tagactc |
35725467 |
T |
|
| Q |
225 |
ccacaattcacatccatgtaataagtcaagttaatagtaatacacttcctcccaaagtcctaagtaggatacattgcattaaatttacaaattactcatg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725468 |
ccacaattcacatccatgtaataagtcaagttaatagtaatacacttcctcccaaagtcctaagtaggatacattgcattaaatttacaaattactcatg |
35725567 |
T |
|
| Q |
325 |
gtcacacctgtgtctctagcatagggagggactccaccattattagcttttgaaaaattaacatagtaaagctcagagactattcctgtaagaacaatga |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725568 |
gtcacacctgtgtctctagcatagggagggactccaccattattagcttttgaaaaactaacatagtaaagctcagagactattcctgtaagaacaatga |
35725667 |
T |
|
| Q |
425 |
aagcagctccagctccaaatactcctttcctcaatgtttgacatgaaggtgctctctctcccaatagatctctatactttgtgtggta |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725668 |
aagcagctccagctccaaatactcctttcctcaatgtttgacatgaaggtgctctctctcccaatagatctctatactttgtgtggta |
35725755 |
T |
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