View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1909_low_12 (Length: 235)
Name: NF1909_low_12
Description: NF1909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1909_low_12 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 20263 - 20497
Alignment:
| Q |
1 |
tgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatcaaaaggaaaccaaaaaataactttccagattaagcaaagttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20263 |
tgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatcaaaaggaaaccaaaaaataactttccagattaagcaaagttcca |
20362 |
T |
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| Q |
101 |
taccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcatcagcaaacactgtctttctcaactcctttacaaactgtgaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
20363 |
taccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcatcagcaaacaccgttttcctcaactcctttacaaactgtgaaag |
20462 |
T |
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| Q |
201 |
ctgcgaatgtgtcctactacaaaaataaaccttca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
20463 |
ctgcgaatgtgtcctactacaaaaataaaccttca |
20497 |
T |
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