View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1909_low_2 (Length: 392)
Name: NF1909_low_2
Description: NF1909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1909_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 376
Target Start/End: Original strand, 3575498 - 3575853
Alignment:
| Q |
21 |
gacctctagtttttcttgatgaattaacatataaatagtaccactaggacataacaaagcatcatcaataaccatcctcttcattttcaatagagatatt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3575498 |
gacctctagtttttcttgatgaattaacatataaatagtaccactaggacataacaaagcatcatcaataaccatcctcttcattttcaatagagctatt |
3575597 |
T |
|
| Q |
121 |
tatttgcttttaactaagttgcaaataaaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttcc |
220 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575598 |
tatttgcatttaactaagttgcaaataaaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttcc |
3575697 |
T |
|
| Q |
221 |
ccttccactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||| |||| |
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| T |
3575698 |
ccttccactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaacaagaagaacgtcccttctggaagcccgtggtacggtccagatcgtg |
3575797 |
T |
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| Q |
321 |
tcaagtacttgggtccattctctggtgaagctccatcttaccttactggtgaattt |
376 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
3575798 |
tcaaatacttgggtccattctctggtgaagctccatcttatctcactggtgaattt |
3575853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 158 - 376
Target Start/End: Original strand, 3572351 - 3572569
Alignment:
| Q |
158 |
atggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcacca |
257 |
Q |
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| T |
3572351 |
atggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattacca |
3572450 |
T |
|
| Q |
258 |
tgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctggtgaagctccatc |
357 |
Q |
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| T |
3572451 |
tgaggaaaacaaccaccaagaagaatgttccttctggaagcccatggtacggtccagaccgtgtcaagtacttgggtccattctctggtgaagctccatc |
3572550 |
T |
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| Q |
358 |
ttaccttactggtgaattt |
376 |
Q |
| |
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||||||||||||||||||| |
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| T |
3572551 |
ttaccttactggtgaattt |
3572569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 95 - 376
Target Start/End: Complemental strand, 3585643 - 3585365
Alignment:
| Q |
95 |
tcctcttcattttcaatagagatatttatttgcttttaactaagttgcaaataaaatactagaatggctacatcaacaatggctctctcttcttcaacaa |
194 |
Q |
| |
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|||||||||||||||||||| || | |||| ||||||| |||| | || ||||||||| ||||||| | ||||||||||||||||| |||||| ||| |
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| T |
3585643 |
tcctcttcattttcaatagaactactcgtttg--tttaacttagttaccaa-aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaa |
3585547 |
T |
|
| Q |
195 |
tggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaccaagaagaatgttccttctcg |
294 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |
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| T |
3585546 |
tggttggaaaggcaatcaagctttccccttcgactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaccaagaagactgctccttctgg |
3585447 |
T |
|
| Q |
295 |
aagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctggtgaagctccatcttaccttactggtgaattt |
376 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
3585446 |
aagccagtggtacggtccagaccgtgtcaagtacttgggtccattctctggtgaagctccatcttacctcacgggagaattt |
3585365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 144 - 376
Target Start/End: Original strand, 3563642 - 3563874
Alignment:
| Q |
144 |
aataaaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgat |
243 |
Q |
| |
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|||||||||||| |||||| | ||||||||| |||||||||||||| || | || ||||||||||||||||||||||| ||||| | |||| ||| | | |
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| T |
3563642 |
aataaaatactaaaatggcggcttcaacaatgtctctctcttcttcatcatttgtagggaaggcaatcaagctttccccatccacccaagacattggggt |
3563741 |
T |
|
| Q |
244 |
gggaagaatcaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctct |
343 |
Q |
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||||||| |||| ||||||||| |||||||||||||| |||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
3563742 |
gggaagagtcacaatgaggaaagcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaagtacttgggcccattctcc |
3563841 |
T |
|
| Q |
344 |
ggtgaagctccatcttaccttactggtgaattt |
376 |
Q |
| |
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|||||||| ||||| ||||| || ||||||||| |
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| T |
3563842 |
ggtgaagccccatcctacctcaccggtgaattt |
3563874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 147 - 375
Target Start/End: Original strand, 3569293 - 3569521
Alignment:
| Q |
147 |
aaaatactagaatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatggg |
246 |
Q |
| |
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||||||| | ||||||| | ||||||||| | |||||||||||| || | || |||||||||||||| |||||||| ||||||| |||| ||| | |||| |
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| T |
3569293 |
aaaataccacaatggctgcttcaacaatgtccctctcttcttcatcatttgtcgggaaggcaatcaaactttccccatccactcaagacattggggtggg |
3569392 |
T |
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| Q |
247 |
aagaatcaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctggt |
346 |
Q |
| |
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|||| |||| |||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
3569393 |
aagagtcacaatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtacttgggcccattctccggt |
3569492 |
T |
|
| Q |
347 |
gaagctccatcttaccttactggtgaatt |
375 |
Q |
| |
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||||| ||||| ||||| || |||||||| |
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| T |
3569493 |
gaagccccatcctacctcacaggtgaatt |
3569521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 375
Target Start/End: Original strand, 13275587 - 13275801
Alignment:
| Q |
157 |
aatggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcacc |
256 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||| || ||||||| ||||||||||| ||| ||| || || | |||||||| || ||||| ||||| |
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| T |
13275587 |
aatggctgcctcaacaatgtctctctcttcttcatcattggttggaaaggcaatcaaacttaacccctctacccaagaccttggtattggaagggtcacc |
13275686 |
T |
|
| Q |
257 |
atgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctggtgaagctccat |
356 |
Q |
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|||| ||||||||||| ||||| ||| |||| |||| || ||||| ||||||||||||||||||||| |||| ||||||| |||||| || |||| |
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| T |
13275687 |
atgaa-aaaacaaccacaaagaaa---gtttcttcaggaagtccatggtatggtccagaccgtgtcaagtacctgggcccattctttggtgaggccccat |
13275782 |
T |
|
| Q |
357 |
cttaccttactggtgaatt |
375 |
Q |
| |
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||||| | ||||||||||| |
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| T |
13275783 |
cttacttgactggtgaatt |
13275801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 38356807 - 38356861
Alignment:
| Q |
294 |
gaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctggtga |
348 |
Q |
| |
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||||||| |||||||| ||||||||||| |||||||| || |||||||||||||| |
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| T |
38356807 |
gaagcccatggtacggcccagaccgtgttaagtacttaggcccattctctggtga |
38356861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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