View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19100_low_2 (Length: 594)
Name: NF19100_low_2
Description: NF19100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19100_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 7832064 - 7832640
Alignment:
| Q |
1 |
agattgggaaggttgggatgtaatttcaaaaggacaacttatgggaagctgagggtggaggttgatgctaagtgtggtaatattagaatggagcacaatg |
100 |
Q |
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| T |
7832064 |
agattgggaaggttgggatgtaatttcaaaaggacaacttatgggaagctgagggtggaggttgatgctaagtgtggtaatattagaatggagcacaatg |
7832163 |
T |
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| Q |
101 |
ctcagaatcagaaacagcgtgagttgggaggtcaaattcacagcacaaatcaaaaacagaataagatgggtttgagcaagaaaagtcttattatgtggat |
200 |
Q |
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| T |
7832164 |
ctcagaatcagaaacagcgtgagttgggaggtcaaattcacagcacaaatcaaaaacagaataagatgagtttgagcaagaaaagtcttattatgtggat |
7832263 |
T |
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| Q |
201 |
tggatgctgctgctgctgttgtgattgaataataattgatttaaatgaaattgttgtaagactcatccttaggagtagttgaaattgtattgaatcgtac |
300 |
Q |
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| T |
7832264 |
tggatgctgctgctgctgttgtgattgaataataattgatttaaatgaaattgttgtaagactcatccttaggagtagttgaaattgtattgaatcgtac |
7832363 |
T |
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| Q |
301 |
ccctcacatgggtgcttcagggtttgaatataccctcaaaccctggaatgatttgatagagcatttgaggggcaaagatggtgaaaagagatattttttg |
400 |
Q |
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| T |
7832364 |
cccttacatgggtgcttcagggtttgaatataccctcaaaccctgcaatgatttgatagagcatttgaggggcaaagatggtgaaaagagatattttttg |
7832463 |
T |
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| Q |
401 |
ctagttagtacattataaatttccattaaagtcataatctgcaagaagataaaagcaggaaatgaataaattgaaaattgttaatatgtgtatgcaacac |
500 |
Q |
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| T |
7832464 |
ctagttagtacattataaatttccattaaagtcataatttgcaagaagataaaagcaggaaatgaataaattgaaaattgttaatatgtgtatgcaacac |
7832563 |
T |
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| Q |
501 |
acagatcaataaaactatgtaaaacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattact |
577 |
Q |
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| T |
7832564 |
acagatcaataaaactatgtaaaacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattact |
7832640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 577
Target Start/End: Original strand, 7914765 - 7914819
Alignment:
| Q |
523 |
aacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattact |
577 |
Q |
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| T |
7914765 |
aacagatttacagtaaactatctgttctagcagggagcctcttgaagaaattact |
7914819 |
T |
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